| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,249,380 | A→G | 2.7% | intergenic (‑176/‑129) | parE ← / → RCAP_rcc02080 | DNA topoisomerase IV subunit B/HAD superfamily hydrolase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,249,380 | 0 | A→G | 2.7% | 3.9 ‑0.4 ‑0.0 | 209 | intergenic (‑176/‑129) | parE/RCAP_rcc02080 | DNA topoisomerase IV subunit B/HAD superfamily hydrolase |
| Reads supporting (aligned to +/- strand): new base (3/4): ref base (114/88): total (117/92) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.02e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.72e-01 | ||||||||||
Only 100 of 241 total aligned reads displayed.
GCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.CC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCCGCATC > NC_014034/2249280‑2249479
|
cccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCaga > 2:4300532/2‑101 (MQ=255)
ccgcgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCagag > 1:3510041/4‑101 (MQ=255)
ccccGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCagag < 1:3116734/101‑1 (MQ=255)
cccgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgg > 1:2206632/1‑101 (MQ=255)
ccgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCAGGGGGGTGAA.TGGCGCA..GCCAGAggg < 2:1978608/101‑1 (MQ=255)
cgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgggg > 1:4450149/1‑101 (MQ=255)
cgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAgggg > 2:45967/1‑101 (MQ=255)
cgtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAgggg > 2:2556298/1‑101 (MQ=255)
gtcccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAggggg < 2:1738376/101‑1 (MQ=255)
cccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGc < 2:1634417/101‑1 (MQ=255)
ccgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCa > 2:2215383/1‑101 (MQ=255)
cgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg > 2:2785752/1‑101 (MQ=255)
cgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg > 1:296729/1‑101 (MQ=255)
cgtGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCAg > 1:1718570/1‑101 (MQ=255)
cgcaagcggACTCCCCCCGGG.ATATTTGCAGCAAGATGAAACCGGAT..G..CCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAggggg < 2:4734452/94‑1 (MQ=18)
tGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg > 2:82292/1‑101 (MQ=255)
tGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg < 2:4149620/101‑1 (MQ=255)
tGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg > 2:717203/1‑101 (MQ=255)
tGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cc > 2:1468707/1‑100 (MQ=255)
gCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAg.cg.c > 1:233057/1‑101 (MQ=255)
ccGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc > 1:3550859/1‑101 (MQ=255)
gcggACTCCCCCCGGG.ATATTTGCAGCAAGATGAAACCGGAT..G..CCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCGAA..GCCAGAGGGGGGCAg.c < 1:991578/99‑1 (MQ=18)
ccattcaccccccGGG.ATATTTTCGGCAAGATGAA...AGCC..C..CCCTTCATCTTGCCGAAAATATCCCGGGGGGCGAA.TGGCGCA..GCCATAGGGGGGCAG.CG.cc > 2:3809676/9‑101 (MQ=11)
gACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.ccc > 1:4029250/1‑100 (MQ=255)
gACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.ccc < 1:737818/101‑2 (MQ=255)
aCT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.ccct > 2:4380080/1‑99 (MQ=255)
aCT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.ccct < 2:3656213/101‑3 (MQ=255)
cT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.ccctt < 1:3089351/101‑4 (MQ=255)
cccccccGGGAATTTTGGAGGAAAGAGGAG...GGGG..G..GTTTTCTTTTTGCAAAAATTACCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.ccct < 1:3981906/99‑3 (MQ=12)
cccccGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.cc.c.cccttcg < 2:677650/101‑6 (MQ=255)
cccccGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGAGAA.TGGCGCA..GCCAGAGGGGGGCAT.CG.CCGC.CC..TTcg > 1:1534838/1‑101 (MQ=25)
ccccGGG.ATATTTGCGGCAAGATGAA...GGGGCAT..GATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAAAGGCCAAGAGGGGGCAG.CG.CC.C.CC..tg > 2:4647477/1‑100 (MQ=0)
cccGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTcgcg < 2:1213634/101‑1 (MQ=255)
ccGGG.ATATTTGAGGCAAGATGAA...GGGG..T..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCgcgg < 2:305186/101‑1 (MQ=255)
cGGG.ATATTTGCGGCAAGATGAA...GGGG..CATGATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAAAGGCCAAGAGGGGGCAG.CG.CC.C.CC..tgccc > 2:3553439/1‑97 (MQ=2)
cGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCgcggg > 1:851451/1‑101 (MQ=255)
gg.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCgcgggcg > 1:2113736/1‑101 (MQ=255)
tatTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGcc > 2:2176177/1‑101 (MQ=255)
atTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGccc > 1:106802/1‑100 (MQ=255)
atTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCcg > 2:1946907/1‑101 (MQ=255)
atTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCcg > 2:2656498/1‑101 (MQ=255)
tttGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATGTCCCGGGGGGTGAA.TGGCGGA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCcgc < 1:2774647/101‑1 (MQ=37)
tGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGa > 1:170387/1‑101 (MQ=255)
gAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGAc < 1:2674363/101‑1 (MQ=255)
gggaaaGATGAG...GGGG..G..GTTTTCATCTTCCCGAAAATACCGGGGGGGGGGAA.GGGCGCA..GCCAGGGGGGGGCAGCCC.CC.C.CC..TTCGCGGGCGGCCGCGAcg < 1:3329894/97‑1 (MQ=255)
aaGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGAcgcgcg > 2:1824702/1‑101 (MQ=255)
aaGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGAcgcgcg > 2:3307546/1‑101 (MQ=255)
aGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACgcgcg.c > 1:3305551/1‑101 (MQ=255)
gATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGcg.cc < 1:4351254/101‑1 (MQ=255)
gATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGcg.cc < 2:2847709/101‑1 (MQ=255)
aTGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGcg.ccg > 2:3922272/1‑101 (MQ=255)
aTGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGcg.ccg < 2:1350217/101‑1 (MQ=255)
tGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGcc.ccac > 2:3969880/1‑99 (MQ=255)
a...GGGG..G..TCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAAc < 1:637770/101‑1 (MQ=255)
gggg..g..gCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACa < 1:2747345/101‑1 (MQ=255)
gggg..g..gCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACa > 1:2461999/1‑101 (MQ=255)
g..g..gCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.CC.CGCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGt > 2:243587/1‑101 (MQ=255)
g..gCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTc < 2:4536517/101‑1 (MQ=255)
tttCTTCTGGCGAAAAATCCCCGGGGGGGTGAA.TGGCGCC..GCCAGGGGGGGGCCG.CC.CC.C.CCCTTTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGt < 2:4029008/101‑1 (MQ=255)
ttCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGc > 2:1795035/1‑101 (MQ=255)
tCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGcc > 2:1070557/1‑101 (MQ=255)
tCATCTTGCCGAAAATATCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCGG.CC.CC.C.CC..CTCGCGGGGCGCCCCGACGCGGGCCCGAAACAGGCGGTGcc > 2:2356170/1‑101 (MQ=16)
cATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGccc < 2:358880/101‑1 (MQ=255)
aTCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGcccc > 2:4121141/1‑101 (MQ=255)
cTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCtt > 2:3402257/1‑101 (MQ=255)
cTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCtt < 1:1135972/101‑1 (MQ=255)
ttGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCttt < 2:505808/101‑1 (MQ=255)
gCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGt < 1:4658713/101‑1 (MQ=255)
cGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCa > 1:3733537/1‑101 (MQ=255)
gAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAt > 2:2895895/1‑101 (MQ=255)
aaaaTATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCAtt < 1:3643399/101‑1 (MQ=255)
aaTATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCt > 1:4276132/1‑101 (MQ=255)
atatCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTg > 1:2056425/1‑101 (MQ=255)
atatCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTg > 1:4587163/1‑101 (MQ=255)
atatCCCGGGGGGGGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTGGTGCCCCTTTGTCCTTCTg > 1:422611/1‑101 (MQ=37)
atCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTc < 2:3122330/101‑1 (MQ=255)
atCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTc > 2:1144011/1‑101 (MQ=255)
cccGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCCACCGGTCGTGCCCCGTTGTCATTCTGTCGc > 2:4243977/1‑101 (MQ=38)
cccGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGc > 1:1764809/1‑101 (MQ=255)
ccGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCa < 1:2215507/101‑1 (MQ=255)
ccGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGCCATTCTGTCGCa > 1:3894795/1‑101 (MQ=255)
gggggTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCAccc > 2:916540/1‑101 (MQ=255)
gggggTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCAccc > 1:2543109/1‑101 (MQ=255)
gggggTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCAccc > 1:4103246/1‑101 (MQ=255)
ggggTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCa < 2:2285914/101‑1 (MQ=255)
gggTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCAt > 2:4208839/1‑101 (MQ=255)
gTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGt > 1:1820113/1‑101 (MQ=255)
gTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGt < 1:4294995/101‑1 (MQ=255)
gTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGt > 2:1314970/1‑101 (MQ=255)
gAA.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCa > 1:2440840/1‑101 (MQ=255)
aa.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCAt < 1:3586526/101‑1 (MQ=255)
a.TGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATa < 2:4355028/101‑1 (MQ=255)
tGGCGCA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATaa > 1:1448251/1‑101 (MQ=255)
gcA..GCCAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTg > 1:685165/1‑101 (MQ=255)
cAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCCGc > 1:1917808/1‑101 (MQ=255)
cAGAGGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCCGc < 1:1315111/101‑1 (MQ=255)
agagGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCCGCa > 2:260490/1‑101 (MQ=255)
agagGGGGGCAG.CG.CC.CGCC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGGCATAAGCTGGCCGCa > 2:3863459/1‑101 (MQ=255)
gagGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCCGCAt < 1:2151801/101‑1 (MQ=255)
agGGGGGCAG.CGCCC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCGGCATc > 1:4153838/1‑101 (MQ=255)
|
GCCCCGTCCCGTGCCGGGACT.CCCCCGGG.ATATTTGAGGCAAGATGAA...GGGG..G..GCTTTCATCTTGCCGAAAATATCCCGGGGGGTGAA.TGGCGCA..GCCAGAGGGGGGCAG.CG.CC.C.CC..TTCGCGGGCGGCCGCGACGCGCG.CCGCAACAGGTCGTGCCCCTTTGTCATTCTGTCGCACCCATGTCATAAGCTGGCCGCATC > NC_014034/2249280‑2249479
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 39 ≤
ATCG
|