| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,067 | A→G | 91.5% | intergenic (+115/‑127) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,067 | 0 | A→G | 91.5% | 22.8 ‑0.6 ‑0.0 | 139 | intergenic (+115/‑127) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (60/60): ref base (7/4): total (73/66) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.32e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.99e-01 | ||||||||||
Only 100 of 149 total aligned reads displayed.
GCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.A..G.CAG..A.AGGGGGGCA.AGCG.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493975‑2494152
|
gCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AAGG.CAG..A.Gggggg > 1:1601862/1‑101 (MQ=18)
aaGCGGGCTCCCGCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGCa < 1:2260694/101‑1 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGCagc > 1:2176995/1‑99 (MQ=18)
gCGGACTCCCCCCGGGAAATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGCaga > 1:4734439/1‑99 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAC.TGGC..GAA..G.CCA..G.AGGGGGGCagcgc > 1:4638215/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGCagcgc > 1:4676075/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.c > 1:2725543/1‑101 (MQ=17)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.cc > 2:2414556/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.cc > 1:283443/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.cc > 2:3025943/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCG.c.ccc < 1:402027/101‑1 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCG.c.ccc < 2:2954777/101‑1 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.ccc < 2:196547/101‑1 (MQ=17)
cTCCCCCCGGGATAGTTGCAGCAAGATGAATCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.ccc < 2:43056/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.cccc > 1:1565968/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.cccc > 2:128706/1‑101 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.ccccct < 2:848858/101‑3 (MQ=17)
ccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.c.ccccctgcc < 2:4018385/101‑6 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..T.AGGGGGGC..AGCGCC.CCCCTGccc > 1:2925682/1‑101 (MQ=18)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGC..C.A..A.AGGCCA.AGAGGGGGC.AGCG.C.CCCCTGcccc < 1:4206111/101‑1 (MQ=0)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGcccc > 1:3588006/1‑101 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGcccc > 1:3846964/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCC..A.AGAGGGGGC.AGCG.C.CCCCTGCCCcg > 2:3750535/1‑101 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCC..A.AGAGGGGGC.AGCG.C.CCCCTGCCCcgc > 1:4404457/1‑100 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCC..A.AGAGGGGGC.AGCG.C.CCCCTGCCCcgcc > 1:2418385/1‑99 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCcggg > 1:3337824/1‑100 (MQ=17)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.A..G.GCC..A.AGAGGGGGC.AGCG.C.CCCCTGCCCcgccg > 2:1139753/1‑101 (MQ=2)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCG.CACCCCTGCCCcggcgg > 2:2029738/1‑101 (MQ=18)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCcggcggc > 2:977702/1‑100 (MQ=17)
tGCAGCAATATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTcc > 1:3303403/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTcc > 2:263673/1‑101 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCg > 1:4463377/1‑101 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGt < 1:4346247/101‑1 (MQ=17)
agcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTg < 1:998655/101‑1 (MQ=17)
agcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTg < 1:2414691/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGG.A.AGCGCC.CCCCTGCCCCGGCGGTCCGTggc > 1:345412/1‑101 (MQ=18)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTggcgg > 2:1161814/1‑101 (MQ=18)
aTGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGgcggcg > 2:1882578/1‑101 (MQ=18)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGcc > 1:2626861/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGGA.TGGC..GAA..G.CCA..G.AGGGGGGCA.GGGC.C.CCCCTGCCCCCGCGGTCAGAGGCGGCGccg > 1:4463056/1‑100 (MQ=12)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGAGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCt > 1:2831091/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg > 1:812992/1‑101 (MQ=17)
ccgATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:1774723/99‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc > 1:769470/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:4640867/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATGTCCCGGGGGTTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg < 1:4552032/101‑1 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGCAGAGC..C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGatcgg > 2:857681/1‑97 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg < 2:1430771/101‑1 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg < 1:1172984/101‑1 (MQ=17)
tgctttacgtCTTGCCCGACATATTCCGGGGGGCAAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCCTGAcgggg > 2:142639/10‑100 (MQ=9)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 1:4037518/101‑1 (MQ=17)
ccTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcgg < 1:1254947/101‑1 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:3228256/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAA..G.CCA..G.AGGGGGGCA.GCAC.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGGCGTGAcgggcggg > 2:4502618/1‑101 (MQ=17)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTTCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg > 1:2587620/1‑101 (MQ=17)
tttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:944117/101‑1 (MQ=17)
tttCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGCG..A.A..A.CCA..A.AGGGGGGCC.AGGGCC.CCCCGGCCCCGGCGG.CCGGGGCCGGGCCCTTGCCGGCggggg > 1:1221501/1‑101 (MQ=9)
tttCATCTTCCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 2:4386003/101‑1 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 2:1718966/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 2:3581/1‑100 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 2:4272800/101‑1 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 2:2564012/101‑1 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGAGGCGGCGCCTTGACGGGCGGGGgc > 2:2012970/1‑101 (MQ=17)
aTCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCGCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggggg > 1:4009401/1‑98 (MQ=17)
tCTTTCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:2176871/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg > 1:46093/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 2:1633663/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGGCCACGAAGGGCCGGGGCGCgggg > 1:835590/1‑100 (MQ=9)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc < 1:617765/101‑1 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCa > 2:4636090/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:172579/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGGCCTTGACGGGCGGGGGCGCGGGCAtt > 1:2628535/1‑101 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:3593736/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:2304365/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:98413/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 1:56142/101‑1 (MQ=18)
gAAATATCCCGGGGGGCGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGCCCTTCACGGGCGGGGGGGCGGGCATTaa > 2:1959993/1‑101 (MQ=12)
aaaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:4734183/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 1:459589/101‑1 (MQ=18)
aaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:1127494/1‑101 (MQ=21)
aaTATCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc < 1:2740830/101‑1 (MQ=21)
atatCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg > 1:1296638/1‑101 (MQ=21)
atatCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:4398025/101‑1 (MQ=21)
taccccGGGGGGTGAA.TGGC..G.A..A.GCC..A.GAGGGGGCC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 2:1329142/98‑1 (MQ=21)
atCCGGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 2:81842/101‑1 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 1:2278845/101‑1 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAA..G.CCA..G.AGGGGGG.G.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGGCGCTTGACGGGCGGGGGCGCGGGCATTAACCGaa > 1:538066/1‑101 (MQ=16)
atCCCGGGGGGGGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGaa > 2:2821257/1‑101 (MQ=21)
ggggggTGAA.TGGC..GAA..G.CCA..G.AGGGCGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:4254827/1‑101 (MQ=25)
gggggTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 1:316332/1‑101 (MQ=25)
gggggTGAA.TGGC..G.AG.G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa < 2:417052/101‑1 (MQ=25)
gggTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 1:3130257/1‑101 (MQ=25)
gggTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:749122/101‑1 (MQ=25)
gggTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:2590566/101‑1 (MQ=25)
gggTGAA.TGGC..G.A..A.GAG..AGAGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 2:71212/101‑1 (MQ=37)
ggTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGAAATTGCaaaa > 1:16817/1‑99 (MQ=21)
ggTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa > 2:377256/1‑101 (MQ=25)
gTGAA.TGGC..GAA..GCCAG....AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg > 1:3642685/1‑101 (MQ=25)
gTGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAg < 1:3047534/101‑1 (MQ=25)
tGAA.TGGC..GAA..G.CCA..G.AGGGGGGC..AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:2132218/101‑1 (MQ=25)
|
GCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.A..G.CAG..A.AGGGGGGCA.AGCG.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493975‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|