| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,995,606 | C→A | 9.0% | intergenic (+146/+74) | RCAP_rcc02802 → / ← RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,995,606 | 0 | C→A | 9.0% | 2.1 ‑2.6 ‑1.2 | 40 | intergenic (+146/+74) | RCAP_rcc02802/RCAP_rcc02803 | membrane dipeptidase/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (3/1): ref base (9/27): total (12/28) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.28e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.80e-02 | ||||||||||
CTTCGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCG > NC_014034/2995506‑2995704
|
cTTCGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.c < 1:2672119/101‑1 (MQ=255)
cTTCGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.c < 1:2461802/101‑1 (MQ=255)
tCGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caa < 2:2083625/101‑1 (MQ=255)
cGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caaa < 2:659638/101‑1 (MQ=255)
cGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caaa < 1:1915601/101‑1 (MQ=255)
cGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caaa < 2:1373861/101‑1 (MQ=255)
gCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caaaa < 1:3876239/101‑1 (MQ=255)
gCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caaaa < 2:4029970/101‑1 (MQ=255)
gCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.Caaaa < 1:2549233/101‑1 (MQ=255)
cccccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAt < 1:60106/101‑1 (MQ=255)
cccccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAt < 1:239885/101‑1 (MQ=255)
ccccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.ACGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.a < 1:3915377/101‑1 (MQ=255)
cccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.Ac < 2:1519035/101‑1 (MQ=255)
cccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.Ac < 1:1511932/101‑1 (MQ=255)
ccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACg < 2:2682435/101‑1 (MQ=255)
ccGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGCTTG.CCGCCCCGCAACCCGTCGGCTGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACg < 2:3945975/101‑1 (MQ=255)
cGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.c < 1:2100218/101‑1 (MQ=255)
ccAAGAGGCGTATTTTGCCAAGGAAACCCCCTTCGGTTC.CCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCgggggg < 1:4241144/101‑1 (MQ=255)
cAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGt > 1:1617129/1‑101 (MQ=255)
aggggCTTATTTGGCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGc < 2:1711956/98‑1 (MQ=37)
agagGCGTTTTTTGCCAAGAAAACCCCCTTGGGTTC.CCGCCCCGCACCCCGTCGGCGCCCCAGCGCCCTGCTTTTCCTTGG.AAAAAT.ACG.CCGGGGGGTGc < 2:3587280/101‑1 (MQ=25)
agagGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGc < 2:4729626/101‑1 (MQ=255)
gagGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCg < 2:2875893/101‑1 (MQ=255)
agGCGTATTTTGCCAAGGAAACCCCCTTCGGCTG.CCGCCCCGCAGCCCGTCGGCGGCCCGGCGCCCTGCTTTTCCTTCG.CAAACT.ACG.CCGGGGGGTGCgg < 2:4735559/101‑1 (MQ=37)
ggCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCggg < 2:702095/101‑1 (MQ=255)
ttgtttGCCAAGGAAAACCCCCTCGGGTGCCCCCCCCGCACCCGGCGGGCGGCCCAGCCCCTTGTTTTTCCTTGG.AAAAAT.ACG.CCGGGGGGTGCgggggg < 2:3437670/98‑1 (MQ=16)
aTTTTGCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCg < 2:749327/101‑1 (MQ=255)
aTTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCg > 2:19752/1‑101 (MQ=255)
tttGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGa < 1:3844525/101‑1 (MQ=255)
tttGCCAAGAAACCCCCCTTCGTTTC.CCCCCCCGCACCCCGTCGGCGGCCCAGCCCCTTGTTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGa < 2:3212058/101‑1 (MQ=18)
ttGCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAg < 2:4203650/101‑1 (MQ=255)
tGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGc > 2:362088/1‑101 (MQ=255)
gCCAAGGAAACCCCCTTCGGTTG.CCGCCCCGCAGCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGcc < 1:362122/101‑1 (MQ=255)
gCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGcc < 2:3173967/101‑1 (MQ=255)
caaagaaaccccccTTCGGTCC.CCCCCCCGCCCCCCGGGGGC.CCCCCCCCCCCTTTTTTTTCTTGGAAAAAAG.CCC.CCGGGGGGTGCGGGGGGCGGAGccc < 1:1623871/91‑1 (MQ=2)
aaGGAAACCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGccccc < 2:1944041/101‑1 (MQ=255)
ggAACACCCCTTCGGTTC.CCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcg < 1:4384569/101‑1 (MQ=255)
gaaaCCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CACAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCcc.cg > 1:2061467/2‑101 (MQ=255)
ccccTTCGTTTC.CCGCCCCGCACCCCGTGGGCGGCCCGGCGCCCTGTTTTTCTTGGG.AAAATT.ACG.CGGGGGGGTGCGGGGGGGGGGGCCCCCCG.CGGGTc < 2:1544220/101‑1 (MQ=16)
cccTGCGGGTG.CGGCCCCGAAGCCCGTGGGGGGCCCCGCCCCTTGCTTTGCCTGGC.CAAAAG.GGG.GGGGGGGGGGGGGGGGGCGGAGCCCCCCG.CGGGTCg < 2:1929713/101‑1 (MQ=9)
ttCGGTTG.CCCCCGCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTCCCTTGG.CAAAAT.AGG.CCGGGGGGTCCGGGGGGCGGAGCCCCCCG.CGGGTCGccc < 2:3893328/101‑1 (MQ=18)
ccccccccCCACCCCGTGGGCGCCCCAGCCCCCTTTTTTCCCGGGG.CAAAAT.CCG.CGGGGGGGTGGGGGGGGGGGAGCCCCCCG.CGGGTCGCCCCGGCTT..g < 1:1419898/97‑1 (MQ=12)
ccGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGGCGCCCCGGCTT..GCCGGGGCGGAATc > 2:4057193/1‑101 (MQ=255)
ccGCCGGCGCCCCAGCCCCCTGCTTTTCCTGGG.AAAAAT.GGG.CGGGGGGGTGGGGGGGGGGGACCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATc < 1:4601521/101‑1 (MQ=18)
gccgcggcCCCGGCCCCTTTTTTTCCTTGG.GAAAATCGCG.CGGGGGGGGGGGGGGGGGGGCCCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATccc < 2:2570271/98‑1 (MQ=16)
ggcCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAAGCCCCCGCTc > 1:686689/1‑101 (MQ=255)
cccccTGCTTTTCCTTGG.CAAAAT.CCG.CGGGGGGGTGGGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCa < 2:2924081/99‑1 (MQ=255)
cTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAgaga > 1:632652/1‑101 (MQ=255)
tGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCTCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCagaggc > 2:3927275/1‑99 (MQ=255)
tttttCCTTGG.AAAAAT.ACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatc > 2:2611488/2‑95 (MQ=0)
ttCCTTGG.AAAAAT.ACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCCGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 1:789505/1‑92 (MQ=0)
ttCCTTGG.AAAAAT.ACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg > 2:4078231/1‑92 (MQ=0)
gg.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGAccccc > 1:1263423/1‑98 (MQ=255)
|
CTTCGCCCCCGGACCCCCAAGAGGCGTATTTTGCCAAGGAAAACCCCTTCGGTTG.CCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGG.CAAAAT.ACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCG > NC_014034/2995506‑2995704
Base quality scores:
ATCG
< 3 ≤
ATCG
< 14 ≤
ATCG
< 22 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|