| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,698 | Δ1 bp | 7.8% | intergenic (+510/‑421) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,698 | 0 | A→. | 7.8% | 52.1 ‑1.4 ‑0.0 | 255 | intergenic (+510/‑421) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (7/13): ref base (118/117): total (125/130) | ||||||||||
| Fisher's exact test strand distribution p-value = 2.46e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.74e-01 | ||||||||||
Only 100 of 272 total aligned reads displayed.
CCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTG > NC_014034/1395601‑1395798
|
ccTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTc < 2:5004547/101‑1 (MQ=255)
tGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCt < 2:2908564/101‑1 (MQ=255)
gATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTcccc > 2:1759941/1‑101 (MQ=255)
tGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCcg < 2:2587669/101‑1 (MQ=255)
tGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCcg < 2:1076791/101‑1 (MQ=255)
ccTTTCGCGGGGCGAGGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCggg < 2:4443916/100‑1 (MQ=255)
cTTTCGCGGGGCGAGGCGTCGCTCCCCCCGCGGGGGCGGGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCgggg < 2:4204907/101‑1 (MQ=255)
cTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCgggg > 2:3282321/1‑101 (MQ=255)
tttCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCggggg > 1:2062927/1‑101 (MQ=255)
ttCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGc > 1:1020281/1‑101 (MQ=255)
cgcgGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGt > 1:4545643/1‑101 (MQ=255)
tggtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGt < 1:31130/91‑1 (MQ=2)
tggtgccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGt < 1:293838/91‑1 (MQ=2)
gggggCGAAGCGTCGCCCCCCCCGGGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTgg < 1:8585/100‑1 (MQ=255)
gggggCGAAGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTgg < 1:1100674/100‑1 (MQ=255)
ggggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGa > 1:2585481/1‑101 (MQ=255)
gggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGAt > 1:4273876/1‑101 (MQ=255)
ggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATc > 1:3128158/1‑101 (MQ=255)
ggCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCCCGGGGGGGTGGATc > 2:3779271/1‑101 (MQ=255)
gCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCg > 1:3793015/1‑101 (MQ=255)
ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 2:1007073/96‑1 (MQ=2)
ccgctgCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCCCGAACCTGTCGGCGGCGAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:2234570/96‑1 (MQ=2)
cGAAGCGTCGCTCCCGCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTTGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGGTCGa > 1:4260684/1‑101 (MQ=255)
aaGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa < 1:2306476/101‑1 (MQ=255)
aaGCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATCGGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaaa < 1:2088558/101‑1 (MQ=255)
gtggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC.TACACCGGGGCTCTGGTG.ACGGTTTGG.GGCGGAGTCGCTCCCCCCGCGGGGGCGGGGATCGAAAcg > 2:3242960/4‑100 (MQ=2)
aGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc > 2:3435013/1‑101 (MQ=255)
ccgcGCCCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.g < 2:1389154/98‑1 (MQ=255)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.g > 2:4326350/1‑101 (MQ=255)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.gg > 2:2690386/1‑101 (MQ=255)
ccGCGCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGt < 1:3641943/100‑1 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAACCCCCGGAACCTGTCGGCGGCGAACACCGATACCGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcatcga < 1:4308045/101‑6 (MQ=2)
cccccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATgg < 2:216899/100‑1 (MQ=255)
ccccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATc < 1:340998/101‑1 (MQ=255)
cccGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCt < 1:2805292/101‑1 (MQ=255)
gcgGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.Ggc < 1:3567444/101‑1 (MQ=255)
gcgGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.Ggc > 1:1235156/1‑101 (MQ=255)
cgGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.Ggcg > 2:1161170/1‑101 (MQ=255)
ggggCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCa > 2:3915629/1‑101 (MQ=255)
ggggCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCa > 1:170856/1‑101 (MQ=255)
ggggTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCaaa < 1:3068081/98‑1 (MQ=255)
ggCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCaaa > 1:728828/1‑101 (MQ=255)
gCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAAc < 2:2212242/101‑1 (MQ=255)
cGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACg > 2:4930133/1‑101 (MQ=255)
gTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACgg > 1:1530876/1‑101 (MQ=255)
gTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGAGCGAAACT.GGTATGGATCT.GGCGCAAACgg > 2:479927/1‑101 (MQ=255)
tGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..a > 1:1350671/1‑101 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..aa > 2:2285565/1‑101 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..aa < 2:3976818/101‑1 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..aa > 1:4133036/1‑101 (MQ=255)
gcctCGAAACTCCTGCATGTAGGCGGCGG.GCGGTTGGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..aa < 2:678962/98‑1 (MQ=37)
gATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..aaa > 2:3603901/1‑101 (MQ=255)
gATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..aaa > 2:3665253/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTc > 2:2767760/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTc > 2:4527218/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTc > 1:516782/1‑101 (MQ=255)
gAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCt > 2:1896613/1‑101 (MQ=255)
aaaCATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTg < 1:89681/101‑1 (MQ=255)
aaaCATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTg < 1:220889/101‑1 (MQ=255)
aaaCATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTg > 1:2734176/1‑101 (MQ=255)
aaCATCTGCATGTGGTGGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTgt < 1:2106180/101‑1 (MQ=255)
aCATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTgtc > 1:1928921/1‑101 (MQ=255)
cATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTgtcg < 1:4909450/101‑1 (MQ=255)
aTCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTgtcgt < 2:1616498/101‑1 (MQ=255)
cTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGtcgtcg > 1:3700067/1‑101 (MQ=255)
cTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGtcgtcg > 1:2398007/1‑101 (MQ=255)
tGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGc > 2:2857642/1‑101 (MQ=255)
ggTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AACGTCTGTCGTCGCT.ccc < 1:4413511/100‑1 (MQ=255)
gTAGTCGGGGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.cccc < 1:1161287/101‑1 (MQ=255)
gTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.cccc > 1:4734729/1‑101 (MQ=255)
gTAGTCGGCGG.GAAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.cccc < 2:4215985/101‑1 (MQ=255)
ggTCGGCGG.GCAGTCCGA.GCCGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.cccccc < 2:516703/100‑1 (MQ=255)
cggcggcgg.GCAGTTCGA.CCCGCTGTCGCTGCCCCCGCGGGGGCGTGGATCTAAACT.GGTTTGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.cccccc < 1:798152/98‑1 (MQ=38)
ggcgg.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCgg > 2:2121547/1‑101 (MQ=255)
gg.gCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCggggg > 1:3318497/1‑101 (MQ=255)
gCAGTGCGA.GCCGCAGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCTCCCCCCCGCGGGGGc < 2:2617497/101‑1 (MQ=38)
cAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGt < 1:2690571/101‑1 (MQ=255)
aGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTg > 2:3345035/1‑101 (MQ=255)
aGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTg < 1:323472/101‑1 (MQ=255)
gTTGGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTgg < 1:3915921/101‑1 (MQ=255)
gTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTgg > 2:3049997/1‑101 (MQ=255)
tCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGAt < 1:3604172/101‑1 (MQ=255)
tCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGAt > 1:2637204/1‑101 (MQ=255)
ccGA.GCCGCCGTCGCCCCCCCCGCGGGGGCGTTGATCGAAACT.GGTATGGATCT.GGCCCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGAt < 1:2138346/100‑1 (MQ=38)
gA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCg < 1:4511956/101‑1 (MQ=255)
caagattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTgg < 1:4882990/94‑1 (MQ=2)
cagattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGa < 2:815732/95‑1 (MQ=2)
aagattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGa < 1:2524565/95‑1 (MQ=2)
agattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGAt > 2:1988707/6‑101 (MQ=2)
gattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGGGGTCGCT.CCCCCCGCGGGGGCGTGGATc > 2:506593/5‑101 (MQ=2)
gCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGaa < 2:4364384/101‑1 (MQ=255)
attcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACATCGGCGATCTGGGT.AAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGATCg > 1:2002408/4‑101 (MQ=2)
ttcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGATCGa < 2:4752545/99‑1 (MQ=2)
cGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAc < 1:69988/101‑1 (MQ=255)
tcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGATCGaa > 2:3575117/2‑101 (MQ=2)
gCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcc > 2:4111666/1‑101 (MQ=255)
cAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGATcagat > 2:4611981/1‑97 (MQ=2)
cAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCt > 1:3220649/1‑101 (MQ=255)
aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAGGACAT.CGCCGATCTGGGTAAGGCCGGTGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAc < 1:2866293/101‑1 (MQ=2)
aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTg < 2:1488763/101‑1 (MQ=255)
|
CCTTGCGGATTGTCACTTTCGCGGGGCGAAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCTGCATGTAGTCGGCGG.GCAGTTCGA.GCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATGGATCT.GGCGCAAACGG..AAAGTCTGTCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTG > NC_014034/1395601‑1395798
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|