| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,056 | +T | 3.2% | intergenic (+104/‑138) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,056 | 1 | .→T | 3.2% | 12.7 ‑0.9 ‑0.6 | 154 | intergenic (+104/‑138) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/1): ref base (86/63): total (90/64) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.03e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.68e-01 | ||||||||||
Only 100 of 167 total aligned reads displayed.
GGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493956‑2494152
|
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATTCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGaa < 2:1670615/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.t < 1:2724890/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.t < 1:231201/101‑1 (MQ=255)
ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.Tg < 2:4312072/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGCAATATCCC.GGGGGGTGAA.Tgg < 1:2876840/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.Tgg > 2:4718543/1‑101 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..g > 2:2348482/1‑101 (MQ=255)
tGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aa > 1:2942809/1‑100 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aag > 1:4935839/1‑99 (MQ=255)
ccccccCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aag < 2:295632/100‑3 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcc < 1:3490442/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcc < 1:1753572/101‑5 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcc < 2:3848104/101‑5 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagcca > 2:1580692/1‑96 (MQ=255)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGCAATATCCC.GGGGGGCGAA.TGGC..G.aagccagagg > 2:4054418/2‑92 (MQ=18)
gtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagccagagg < 2:4234184/100‑10 (MQ=255)
tCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.aagccagaggg < 1:1113887/101‑11 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCa > 2:2286492/1‑101 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGATATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:5013465/1‑98 (MQ=17)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCaggg > 2:2108998/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GTGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:4296424/1‑97 (MQ=17)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 2:305709/1‑97 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGTTGAAACCGGATGCCCTTCATCTTGCCCGAAATATCCC.GGGGGGTGAG.TCGC..GAAG.CCACAGGGGGGC.AGCG.c.ccc > 2:1792817/1‑101 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.cccc > 2:3924517/1‑101 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.ccccc < 2:4222518/101‑2 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGccc < 2:1778835/101‑1 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGcccc > 2:3722405/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCC.TGCCCcg > 1:414303/1‑101 (MQ=2)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCC.TGCCCcgc > 1:1106325/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AA.GCCAGAGGGGGCCAGCGCC.CCCC.TGCCCcgg > 1:1500262/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.C.CCCC.TGCCCcgg > 2:3780334/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCC.TGCCCcgcc > 2:190218/1‑99 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCC.TGCCCcgcc < 2:2567939/101‑3 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCC.TGCCCcgcc > 1:831521/1‑99 (MQ=2)
atatTTGCAGGAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.GGGC..GAAG.CCAGAGGGGGGCCGGGC.C.CCCC.TGCCCcgcc > 1:1654281/1‑99 (MQ=17)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCcgcg > 1:2509077/1‑99 (MQ=17)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCcggc > 1:1947906/1‑101 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGt < 2:1530092/101‑1 (MQ=17)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTc < 1:1445728/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGGcc > 1:3779656/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGCcc > 1:3021628/1‑101 (MQ=17)
tGCACNNAGATGCAACCGGATTCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTcc < 1:1976333/101‑1 (MQ=14)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCcggcggggcgt > 2:4463382/1‑96 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTgg > 1:4272173/1‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTggcgg > 2:3403828/1‑101 (MQ=18)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCCGCGGTCCGTggcgg > 2:3144664/1‑101 (MQ=17)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTggcggc > 1:991197/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCt > 2:29184/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCt > 1:3099186/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCtt < 2:2912032/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg > 2:3661741/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg < 1:4969488/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg < 1:1317686/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGa > 2:2153091/1‑101 (MQ=18)
ccGGATGCCTTTCATCTTCCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGa < 2:1609947/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAc > 1:4841375/1‑101 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcg < 2:3017367/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcgg > 1:4469323/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCA.CACCCC.TGCCCCGGCGGTCCGTGGCGGGG.CCCTGAcgg > 1:836473/1‑101 (MQ=12)
tGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcgggc < 1:740217/101‑1 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGT.GCGGCG.CCTTGAcgggcg > 2:218413/1‑101 (MQ=17)
tttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCgggg > 2:1200603/1‑101 (MQ=18)
tttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCgggg < 2:4831782/101‑1 (MQ=17)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:76190/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:2277111/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACCGGCggggg > 2:2228155/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.CGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:1903303/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TCCCCCGGCGGTCCGTGGCGGCG.CCTTGACCGGGgggggg > 2:1239428/1‑100 (MQ=9)
cATCTTGCCCGAAATATCCC.GGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGgcg > 1:531678/1‑101 (MQ=18)
aTCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGgcgg > 1:2168370/1‑100 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg > 1:3041789/1‑101 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg < 2:4405102/101‑1 (MQ=18)
tGCCCGAAATATCCCGGGGGGGGGAA.TGGG..G.AA.CCAAGGGGGGGGAAGGG.C.CCCCTTGCCCCGCCGGCCCG.GGCGGGGCCCTTGACGGGGGGGGGGGGggg > 1:2060910/1‑101 (MQ=255)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.GCTTGACGGGCGGGGGCGCGGGc > 2:4999236/1‑101 (MQ=18)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGc < 1:3325569/101‑1 (MQ=18)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGc < 2:1954602/101‑1 (MQ=18)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGc < 1:380383/101‑1 (MQ=18)
gCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AA.GCCAGAGGGGGCCAGCGCC.CCCC.TCCCCCGGCGGTCCGTGGCGGCG.CCTTCACCTGGGGGGGCGCggggc > 2:621723/1‑99 (MQ=9)
cccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAt < 1:2606143/101‑1 (MQ=18)
cccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAt < 1:2381922/101‑1 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt < 1:2961129/101‑1 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt > 2:3021597/1‑101 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt < 1:2861406/101‑1 (MQ=18)
ccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAtt > 2:2835915/1‑101 (MQ=18)
cgcaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTa < 2:4256508/98‑1 (MQ=18)
cGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTGGACGGGCGGGGGCGCgggactga > 2:3170134/1‑96 (MQ=17)
aaaTATCCC.GTGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGGGCGGGCATTAAc > 1:3450778/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:4202196/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAAc > 1:3127500/1‑101 (MQ=18)
aaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.AAGAGCC.CCCC.TGCCCCGGCGGACAGCGGCGGAG.ACTTGACGGGGGGGGGCCCGGGCGTCAAcc > 1:4022190/1‑101 (MQ=2)
tatCCG.GGGGGGTGAA.TGCC..GAAG.CCAGAGGGGGGCAGCCC.C.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 1:2004203/101‑1 (MQ=25)
tatCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 1:4144164/1‑101 (MQ=21)
atCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 2:551369/101‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa > 1:3623977/1‑101 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 2:333362/101‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4718866/101‑1 (MQ=21)
ccc.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:234970/101‑1 (MQ=21)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:4782575/101‑1 (MQ=25)
ggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCaa < 2:3452673/101‑1 (MQ=25)
gggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCC.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 2:2360260/1‑101 (MQ=25)
|
GGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.CCCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493956‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 40 ≤
ATCG
|