| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 904,934 | +GC | 100% | intergenic (+38/‑158) | RCAP_rcc00821 → / → murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 904,934 | 1 | .→G | 100.0% | 94.7 | 146 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (59/58): ref base (3/26): total (62/84) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.23e-05 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 4.66e-01 | ||||||||||
| * | NC_014034 | 904,934 | 2 | .→C | 100.0% | 93.9 | 146 | intergenic (+38/‑158) | RCAP_rcc00821/murB | hypothetical protein/UDP‑N‑acetylmuramate dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (59/58): ref base (3/26): total (62/84) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.23e-05 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.14e-01 | ||||||||||
Only 100 of 159 total aligned reads displayed.
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTT.TG.GCT..G..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAC > NC_014034/904834‑905024
||
gCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cg < 1:4492416/101‑2 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCGCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgcc < 1:4607222/101‑4 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGGGCTGCCCCCCTC.TTT.TG.GCT..G..cgcc > 2:4736587/1‑98 (MQ=255)
tGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgcc < 2:4805324/101‑4 (MQ=255)
tGAGCGTGCTGCGCGGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgcc < 2:3703741/101‑4 (MQ=255)
ggggCGTGCTGCGCTGGCCGGTGCGG.GGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgcca < 1:4661159/98‑5 (MQ=37)
gAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgcca < 2:2475222/101‑5 (MQ=255)
aGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCC.CCTTT.TG.GCT..G..cgccaa > 1:4075995/1‑96 (MQ=38)
gCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaa < 2:4133850/101‑7 (MQ=255)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaa < 1:1414180/101‑8 (MQ=37)
cGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaa < 1:4369760/101‑8 (MQ=37)
gggctggGCTGGCCGGGGCGGGGGCTCTTTGCC.GCGATGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaat < 1:1012994/99‑9 (MQ=21)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgcccaaat > 2:4164367/1‑93 (MQ=37)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaat < 1:3861166/101‑9 (MQ=37)
gTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaat < 1:3833559/101‑9 (MQ=37)
tgctggGCTGGCCGGTGCGGCGGCTCTTTGCC.GCTATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaatt < 2:1124661/101‑10 (MQ=25)
tgctgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGTGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaatt < 2:630250/101‑10 (MQ=25)
tgctgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaatt < 1:2923359/101‑10 (MQ=25)
tgctgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaatt < 1:3152759/101‑10 (MQ=25)
tgctgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..G..cgccaaaatt < 1:329164/101‑10 (MQ=25)
gctgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTc < 2:229295/101‑1 (MQ=25)
ctgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCa < 1:1935753/101‑1 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAc < 2:4602988/101‑1 (MQ=25)
tgcGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAc < 2:4986527/101‑1 (MQ=25)
gcgcTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CCAAATTCAcc > 2:3286486/1‑101 (MQ=25)
gcgcTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAcc < 2:1490501/101‑1 (MQ=25)
cgcTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAccc < 2:4923352/101‑1 (MQ=25)
tcgggCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAcccc < 2:4382248/98‑1 (MQ=21)
gcTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAcccc < 2:2939298/101‑1 (MQ=25)
tGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAcccccc > 2:2111291/1‑101 (MQ=21)
tGGCCGGTGCGGCGGCTCTTGGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCAcccccc < 1:991909/101‑1 (MQ=21)
ggCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCg > 1:3255591/1‑101 (MQ=21)
ggCCGGTGCGGCCGCTCTTTGCC.GCGTTGCCCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCg < 1:2727414/101‑1 (MQ=18)
gCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTTGTC.TGC..G..C..CAAAATTCACCCCCCgg < 2:3840833/101‑1 (MQ=21)
cGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGTGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCg < 2:2694125/101‑1 (MQ=21)
ggTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCCGCgg > 1:1016686/1‑100 (MQ=21)
cgtgggggcgcTCTTTGCCGGCGTGGCCCCGGCGCGCCGGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTT.GGCGGC..G..C..CAAAATTC.CCCCCCGGCGt < 2:1697909/92‑1 (MQ=9)
tGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTAt < 1:3750859/101‑1 (MQ=21)
gcggcgGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCggaccttt > 1:2075033/1‑95 (MQ=18)
gcggcgGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTCtt > 1:292082/1‑101 (MQ=21)
cggcggCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTAttt > 1:936372/1‑101 (MQ=21)
cggcggCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATACACCCCCCGGCGTAttt > 2:4539227/1‑101 (MQ=21)
ggcggcTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTg > 1:1934338/1‑101 (MQ=21)
ggcggcTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTg > 1:3129949/1‑101 (MQ=21)
ggcggcTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTg > 1:3079952/1‑101 (MQ=21)
gcggcTCTTTGCC.TCGTTGCCCCGGCGCGAGTGAGGGCTGAGAATGGTGGCGCTTCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGc < 1:130820/101‑1 (MQ=12)
gtctctTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCAc < 2:3548813/99‑1 (MQ=18)
ctctTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCa > 2:3424034/1‑101 (MQ=21)
ctTTGCC.GCGATGCACCGGAGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAgg < 2:3527426/101‑1 (MQ=21)
ttGCC.GCGATGTACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGaa < 1:484115/101‑1 (MQ=18)
ttGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGaa < 2:3649886/101‑1 (MQ=21)
gCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGaaaa < 1:4615926/101‑1 (MQ=21)
gggATGCACCGGCGCGACTGAGGGCCGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGc < 1:1671118/99‑1 (MQ=18)
gATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGccc > 1:2650606/1‑101 (MQ=21)
gtggaCCGGGGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg < 2:3893015/97‑1 (MQ=18)
aTGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCg > 2:3868711/1‑101 (MQ=21)
aCCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGt > 2:192098/1‑101 (MQ=21)
ccGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGtt < 1:3174275/101‑1 (MQ=21)
cGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttt > 2:212519/1‑101 (MQ=21)
ggCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCCGCGTATTTGCACCCGGAAAAAACCCGGCGtttt > 1:4125215/1‑101 (MQ=18)
gcgcGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGttttt < 1:1131153/101‑1 (MQ=21)
cgcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTc > 2:690568/1‑101 (MQ=21)
cgcgACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTc < 1:4011803/101‑1 (MQ=21)
ggACTGATGGCTGGGCCGGGGGGCCCTTCCCCCCTC.TTT.TG.GCT..GCTC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCt < 1:214754/100‑1 (MQ=21)
cTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGt > 2:4709159/1‑101 (MQ=21)
gAGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGCTTTTCCTGGTCg > 1:4813507/1‑101 (MQ=18)
aGGGCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGa < 2:334652/101‑1 (MQ=21)
gggCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGaa < 2:4001336/101‑1 (MQ=21)
gCGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAAt < 1:1144777/101‑1 (MQ=21)
cGGGGCAGGGTGGCGCTGCCCCCC.CCTTT.TG.GCT..G..CGGCAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGTCGTTTTTCCTGGTCGAGATa < 2:242754/101‑1 (MQ=21)
cGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATa < 1:4395998/101‑1 (MQ=21)
cGGGGCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..GCCC..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCGGGGGGTTTTCCTGGTCGAAATa > 2:527156/1‑101 (MQ=18)
cGGGGCAGGGGAGCTCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCCCCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATa < 2:2803203/101‑1 (MQ=21)
ggggCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATAc > 2:1080786/1‑101 (MQ=21)
gggCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCT..GATC..CGAAATTCACCCCCCGGCGTACTTGCACCAGGAAAAAGCCCGGCGTTTTTCATGGTCGAAATACg < 1:4321433/101‑1 (MQ=25)
gCAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGcc < 1:2344656/101‑1 (MQ=21)
cAGGGGGGCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCg > 1:744000/1‑101 (MQ=21)
gggggCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTCCCTGGTCGAAATACGCCgggg < 1:3717463/101‑1 (MQ=21)
gggCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCgggggg < 2:4341886/101‑1 (MQ=25)
ggCGCTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGa < 2:292029/101‑1 (MQ=25)
ggCGCTGCCCACCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGa < 1:848384/101‑1 (MQ=25)
cgcTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAgc > 1:4896555/1‑100 (MQ=25)
gcTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTc > 2:2706114/1‑101 (MQ=37)
cTGCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTcc < 1:2168750/101‑1 (MQ=37)
gCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGc > 2:1788048/1‑101 (MQ=37)
gCCCCCCTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTNCCTGGTCGAAATACGCCGGGGGGAGTCCGc > 1:574146/1‑101 (MQ=37)
ccccccTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCAGCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCt < 1:2197539/101‑1 (MQ=37)
cccccTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 1:5016027/101‑1 (MQ=37)
cccccT.TTTT.TG.GCTGCG..C..CAAAATTCCCCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCtt < 1:3644587/101‑1 (MQ=25)
ccccTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTg > 2:1226729/1‑101 (MQ=37)
cccTC.TTT.TG.GCTGCG..C..CAAAATTCCCCCCCCGGCGTATTTGCCCCAGGAAAAAGCCCGGCTTTTTTCCTGGGCGAAATACGCCGGGGGGAGTCCGCTTGc < 1:1824105/101‑1 (MQ=25)
cccTC.TTT.TG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGc < 1:1315122/101‑1 (MQ=37)
cctcttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCg > 2:1759580/5‑101 (MQ=38)
ctcttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg < 2:1559695/98‑1 (MQ=38)
ctcttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg > 1:4397741/4‑101 (MQ=37)
ctcttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCgg < 1:4519426/98‑1 (MQ=38)
ttttt.tG.GCT..GCCC..CAAAATTCCCCCCCCGGCGTATTTGCACCAGAAAAAAGCCCGGCTTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa < 1:3424298/100‑1 (MQ=25)
tcttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGa > 2:1914444/3‑101 (MQ=37)
cttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 1:4219990/2‑101 (MQ=255)
cttt.tG.GCTGCG..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAc > 1:2204341/2‑101 (MQ=255)
||
GGGCTGAGCGTGCTGCGCTGGCCGGTGCGGCGGCTCTTTGCC.GCGATGCACCGGCGCGACTGAGGGCGGGGCAGGGGGGCGCTGCCCCCCTCTTTT.TG.GCT..G..C..CAAAATTCACCCCCCGGCGTATTTGCACCAGGAAAAAGCCCGGCGTTTTTCCTGGTCGAAATACGCCGGGGGGAGTCCGCTTGCGGAC > NC_014034/904834‑905024
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 32 ≤
ATCG
< 39 ≤
ATCG
|