| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,750 | A→C | 17.9% | intergenic (+562/‑369) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,750 | 0 | A→C | 17.9% | 121.4 ‑1.1 ‑0.0 | 290 | intergenic (+562/‑369) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (19/26): ref base (110/105): total (141/149) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.26e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.12e-01 | ||||||||||
Only 100 of 305 total aligned reads displayed.
GGCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGG > NC_014034/1395650‑1395850
|
ggggTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCaaa < 1:3068081/98‑1 (MQ=255)
ggCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCaaa > 1:728828/1‑101 (MQ=255)
ggCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCaaa > 2:521171/1‑101 (MQ=255)
gCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAAc < 2:2212242/101‑1 (MQ=255)
gTGGATCGAACCATCTGCATGTAGTGGGCGGGCGGTTGGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACgg < 2:4046148/101‑1 (MQ=37)
ggATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..aa > 1:4133036/1‑101 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..aa > 2:2285565/1‑101 (MQ=255)
ggATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..aa < 2:3976818/101‑1 (MQ=255)
ggtCGAAGCATCTGGTGGTGGGCGGCGGGCGGTTGGAGCCGGAGTGGCGCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..aaa < 1:3611064/99‑1 (MQ=21)
cGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTc > 1:516782/1‑101 (MQ=255)
cGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGCATG.GATCTG..GCGCAAACGG..AAAGTc > 2:291157/1‑101 (MQ=255)
gAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCt > 2:1896613/1‑101 (MQ=255)
aaaCATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.g < 1:220889/101‑1 (MQ=255)
aaaCATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.g < 1:89681/101‑1 (MQ=255)
aaaCATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.g < 2:4403571/101‑1 (MQ=255)
cATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.g..tcg > 1:2817565/1‑101 (MQ=255)
tCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGCCT.g..ccgtc > 2:3679848/1‑101 (MQ=255)
tGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGc > 2:2857642/1‑101 (MQ=255)
aTGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.cc > 1:3816673/1‑101 (MQ=255)
gTAGTCGGGGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.cccc < 1:1161287/101‑1 (MQ=255)
gTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.cccc < 2:4599327/101‑1 (MQ=255)
gTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.cccc > 1:4734729/1‑101 (MQ=255)
gTAGTCGGCGGGAAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.cccc < 2:4215985/101‑1 (MQ=255)
gTCGGGGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCcg < 1:3210529/101‑1 (MQ=255)
tgggggggCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCcgc < 2:4502216/96‑1 (MQ=255)
ggcggGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCgg > 2:2121547/1‑101 (MQ=255)
ggcggGCAGTGCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCgg < 2:3864247/101‑1 (MQ=255)
ggCGGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGc < 2:3378504/101‑1 (MQ=255)
gCAGTGCGAGCCGCAGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCTCCCCCCCGCGGGGGc < 2:2617497/101‑1 (MQ=38)
cAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGt < 1:2690571/101‑1 (MQ=255)
aGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCN.CCCCCCGCGGGGGCGTg > 2:1196052/1‑101 (MQ=255)
gTTCGAGCCGCAGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTgg < 2:4180378/101‑1 (MQ=255)
ttCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGa < 1:4930463/101‑1 (MQ=255)
tCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGAt > 1:2637204/1‑101 (MQ=255)
caagattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTgg < 1:4882990/94‑1 (MQ=2)
cGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATc < 2:721739/101‑1 (MQ=255)
gcgcgctggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGAt < 1:98905/93‑1 (MQ=0)
aagattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGa < 1:3662728/95‑1 (MQ=2)
gcgctggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCg < 1:3977772/95‑1 (MQ=0)
gattcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..GGGTCGCT.CCCCCCGCGGGGGCGTGGATc > 2:506593/5‑101 (MQ=2)
atctcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATc < 1:4612303/97‑1 (MQ=2)
ccGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGaaa < 1:4527538/101‑1 (MQ=255)
attcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCg < 1:4809219/98‑1 (MQ=2)
tcAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGaa > 2:3778276/2‑101 (MQ=2)
ctggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGaaa < 2:4923984/98‑1 (MQ=2)
tggTCGCCCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAc < 2:1387470/99‑1 (MQ=2)
cAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCt < 1:1941386/101‑1 (MQ=255)
ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcc < 1:1258730/100‑1 (MQ=2)
aGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAc < 2:4756481/101‑1 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAca > 1:1683291/1‑100 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAca < 1:14932/101‑2 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCt < 2:4361923/101‑1 (MQ=2)
tCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcac < 1:2535894/101‑3 (MQ=2)
gcGCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.ATGACCAAAT..CCGCAATCGG..CCGGGCT.GGATCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCta < 1:4264405/100‑2 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcaccc > 2:4984721/1‑97 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatg < 1:155601/101‑4 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatg < 1:1057341/101‑4 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatg > 1:378423/1‑98 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcggt < 2:4565843/101‑2 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcggc < 1:618059/101‑1 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccg < 2:4893434/101‑6 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatgag < 1:3037247/101‑6 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatgag > 2:3106645/1‑96 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACT.TG.AT..GACCAGATCCGCAATCGG..CCGGGCTCGA.TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCtatgag > 1:2439499/1‑96 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTgcggcgg > 2:1599849/1‑100 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACTCGGCAAG.GACATC..GCCGATCTGGGTAAGGCCG.G..TGGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAAcacccggc > 1:2159312/1‑94 (MQ=0)
ccccccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTg < 2:1530746/101‑1 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTg > 1:3330049/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTg > 1:84409/1‑101 (MQ=255)
cccccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGa < 2:3727125/101‑1 (MQ=255)
cccccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT..CCCCCGCGGGGGCGTGGATCGAAACCCGCGGCGGGAg > 2:3491625/1‑101 (MQ=255)
cccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTTAGt < 2:4274163/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGtt < 1:133561/101‑1 (MQ=255)
cgcgGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAgatc > 2:5017295/1‑98 (MQ=255)
cgcgGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTg < 1:3435277/101‑1 (MQ=255)
cgGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGcc < 1:2679592/101‑1 (MQ=255)
gggggCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCa > 1:2319675/1‑101 (MQ=255)
ggggCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAg > 2:1964466/1‑101 (MQ=255)
gCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGa < 2:2694452/101‑1 (MQ=255)
cGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGAt < 1:4326667/101‑1 (MQ=255)
cGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGAt < 1:2384191/101‑1 (MQ=255)
gTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATa > 2:2752649/1‑101 (MQ=255)
gggATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT..CCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGa < 1:3491890/100‑1 (MQ=255)
aTCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACg < 1:444478/101‑1 (MQ=255)
cGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGcc < 1:2080246/101‑1 (MQ=255)
gAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCg > 2:2298444/1‑101 (MQ=255)
aaaCT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCGGTGATAGACGCCGt > 1:4973808/1‑101 (MQ=255)
aaaCT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGt > 2:1840929/1‑101 (MQ=255)
aaaCT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGt > 2:3326507/1‑101 (MQ=255)
aCT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGCGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTgg > 1:2971400/1‑101 (MQ=255)
t.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAc > 1:1873195/1‑101 (MQ=255)
t.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAc < 1:3282583/101‑1 (MQ=255)
gTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGt < 2:3621307/101‑1 (MQ=255)
tATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTc < 2:4305053/101‑1 (MQ=255)
aTG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCg < 2:2016822/101‑1 (MQ=255)
aTCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcc > 2:2225371/1‑101 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc > 2:4673375/1‑101 (MQ=255)
g..gCGCAAACGG..AAAGTCT.G..TCGTCGCC.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTcccccc < 1:2115748/101‑1 (MQ=255)
aaCGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCgggg < 2:3585135/101‑1 (MQ=255)
aaCGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTAAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCgggg < 1:4029958/101‑1 (MQ=255)
|
GGCGTGGATCGAAACATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GGTATG.GATCTG..GCGCAAACGG..AAAGTCT.G..TCGTCGCT.CCCCCCGCGGGGGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGG > NC_014034/1395650‑1395850
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|