| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,849 | C→G | 21.7% | intergenic (‑273/‑130) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,849 | 0 | C→G | 21.7% | 11.1 ‑1.2 ‑0.1 | 41 | intergenic (‑273/‑130) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (0/9): ref base (6/26): total (6/35) | ||||||||||
| Fisher's exact test strand distribution p-value = 3.09e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.59e-01 | ||||||||||
AGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...GT...C...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCC > NC_014034/1732749‑1732945
|
aGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGc > 2:3067514/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCgg > 1:384409/1‑101 (MQ=255)
cGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCgg > 1:2572735/1‑101 (MQ=255)
gACCAGGCCCCCCTGCAGCCGCATGCCGCCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCggggg < 1:2554209/101‑1 (MQ=255)
ccAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGt < 1:3934840/101‑1 (MQ=255)
ccAGGCCCCCCTGCAGCCGCATGCCCTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATTCCCCCTTCTTTCTTTTC.GGGGGGGCggggggg < 2:1104357/101‑2 (MQ=255)
aGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGa < 1:1567838/101‑1 (MQ=255)
aGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGa < 1:4421487/101‑1 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGaa < 2:3273589/101‑1 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGaa < 1:3866241/101‑1 (MQ=255)
ggCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGaa < 1:3089479/101‑1 (MQ=255)
gCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCgggggggggcg > 2:4974108/1‑96 (MQ=255)
accccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCgggggggggag > 2:2541007/2‑96 (MQ=255)
ccccccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGTGCGGGGGGTGAAGc < 1:5006427/101‑1 (MQ=255)
cccTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGGAGgccc > 1:896026/1‑101 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGccccc..c < 2:422046/101‑1 (MQ=255)
cTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGAAGccccc..c > 1:1609247/1‑101 (MQ=255)
cTGCAGCCGCATGCCGGCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGccccc..c < 2:3685906/101‑1 (MQ=255)
tGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...g < 2:1246823/101‑1 (MQ=255)
gCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...gc > 2:3477643/1‑100 (MQ=255)
cggCCTCAGGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...gcg < 2:1540772/99‑3 (MQ=255)
aGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGAAGacccc..cccgg > 2:229621/1‑97 (MQ=255)
gCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGGAGgcccc..cccgggggg > 1:4175091/1‑93 (MQ=255)
gCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGGAGgcccc..ccccggggg > 2:2807130/1‑93 (MQ=255)
tGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...gcggggcgcgc > 2:1639461/1‑91 (MQ=255)
ccAACAGGCAAGGGCCCCGCTTTTCCTAGGAAAAATACCCCTTTCTTTCTTTGG.GGGGGGGGGGGGGGGGAAGCCCCC..C...GCGGGT...CG.CCTCGGGCTTGccc < 2:4476187/100‑1 (MQ=12)
cAACGGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCg < 2:4201378/101‑1 (MQ=21)
aGGCAGGGGCCCCGCTGTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGc < 2:3335678/101‑1 (MQ=18)
ggcgggggCCCCGTTTTTCCTGGGCAAAACCCCCCTTTTTTTCTTTGG.GGGGGGGGGGGGGGTGAACCCCCC..C...GCGGGT...CG.CCTCGGGCTTGCCCGAGGCg < 1:1639593/96‑1 (MQ=2)
aggcacccgtcTTTTCCGAGGCAAAAAACGCCCTTCTTTCTTTGC.GGGGGGGGGGGGTGGAAATCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGaaa < 2:1609115/91‑1 (MQ=9)
aGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTGTTC.GGGGGGGCGGGGGGGGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAg < 1:2118920/101‑1 (MQ=18)
gggCCCCGCTTTTCCTAGCCAAAATCCGCCCTTCTTTCTTTTG.GGGGGGGCGGGGGGTGAAGCCCCC..C...GCGGGT...CG.CCTCGGGCTTGCCCGAGGCGAAAGc < 2:389012/101‑1 (MQ=17)
ccccGTTTTCCTTGGGAAAAATCCGCCTTTTTTTCTTTCG.GGGGGGGGGGGGGGTGAGCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTc < 2:4907067/101‑1 (MQ=0)
cgttttgcttAGGAAAAATCCGCCTTTTTTTTTTTGG.GGGGGGGGGGGGGGGGAACCCCCC..C...GC...GGGTCG.CCTCGGGCTTGCCCGAGGCGAAAGCTTcccc < 1:3700412/92‑1 (MQ=2)
ggCAAAATCCGCCTTTCTTTCTTTGG.GGGGGGGCGGGGGGGGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAAcc < 2:1946435/101‑1 (MQ=14)
aaaaTACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTTAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGCGGAAACCTTg > 1:403538/1‑101 (MQ=18)
aagtACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCTCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGc < 1:219711/98‑1 (MQ=18)
aaaTACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGGGGAGCCCCC..CCCGGG...G...CGCCCCCGGGCTTGCCCGGGGCGAAGGGTCCCCCCCCCGAAAAcccct > 2:4911729/1‑98 (MQ=255)
tccGCCCTTTTTTGTTTGG.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTg < 1:2235457/99‑1 (MQ=14)
cccccTTTTTTTTTTTG.GGGGGGGGGGGGGGTAACCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:1294113/99‑1 (MQ=12)
cGCCTTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 1:783118/101‑1 (MQ=18)
cGCCCTTTTTTCTTTTG.GGGGGGGCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTgcg < 2:4808478/101‑1 (MQ=18)
tttttctttCG.GGGGGGGGGGGGGGTGAACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTc < 2:2186733/99‑1 (MQ=17)
tttgcggtC.GGGGGGGAGGGGGGCGAAGCCNCCGGCG..GG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGc < 1:2459183/94‑1 (MQ=17)
ttttgC.GGGGGGGCGGGGGGTGACCCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 2:1353154/100‑1 (MQ=18)
ttttCGGGGGGGGCGGGGGGTAAAACCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCttt < 1:806752/101‑1 (MQ=18)
tttG.GGGGGGGGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTcc < 1:744353/101‑1 (MQ=18)
tttC.GGGGGGGGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTcc < 1:2322561/101‑1 (MQ=21)
tggggggggGGGGGGGTGCACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCt < 2:2424321/99‑1 (MQ=18)
gggggggGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:3314660/101‑1 (MQ=21)
gggggggCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCttt < 2:696480/101‑1 (MQ=21)
ggggggGGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTc < 2:384356/101‑1 (MQ=21)
gggggCGGGGGGTGAACCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCg < 1:1676318/101‑1 (MQ=21)
gCGGGGGGTGAAGCCCCC..CGCGGG...T...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGccc < 1:4199792/101‑1 (MQ=21)
|
AGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGGCAAAATACGCCCTTCTTTCTTTTC.GGGGGGGCGGGGGGTGAAGCCCCC..C...GT...C...CG.CCTCGGGCTTGCCCGAGGCGAAAGCTTCCCCCCGTGAAAACCTTGCCTGCGCGCGTCGCTTTCCCTTTCGGCCC > NC_014034/1732749‑1732945
Base quality scores:
ATCG
< 3 ≤
ATCG
< 8 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|