| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,075 | C→G | 3.5% | intergenic (+123/‑119) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,075 | 0 | C→G | 3.5% | 4.6 0.0 ‑0.6 | 157 | intergenic (+123/‑119) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (4/2): ref base (87/63): total (92/65) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.24e-01 | ||||||||||
Only 100 of 177 total aligned reads displayed.
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493977‑2494170
|
aGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCag < 2:2294015/101‑2 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagc < 2:2245006/101‑3 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:4922635/1‑97 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 1:2912258/1‑101 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 1:1658484/1‑101 (MQ=17)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 1:1954739/1‑101 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGTTGAAACCGGATGCCCTTCATCTTGCCCGAAATATCCC.GGGGGGTGAG.TCGC..GAAG.CCACAGGGGGGC.AGCG.c.c.cc > 2:1792817/1‑101 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.ccc > 2:3924517/1‑101 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.cccc < 2:4222518/101‑2 (MQ=17)
cccccGGAATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCG.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c.cccct < 2:4240711/101‑3 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCCTCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGccc > 1:1996975/1‑101 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCcg < 1:4273383/101‑1 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCC.TGCCCcgc > 1:1106325/1‑100 (MQ=2)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AA.GCCAGAGGGGGCCAGCGCC.C.CCC.TGCCCcgg > 1:1500262/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.C.C.CCC.TGCCCcgg > 2:3780334/1‑101 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCC.TGCCCcgcc < 2:2567939/101‑3 (MQ=2)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC..AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.C.CCC.TGCCCcgcc > 1:831521/1‑99 (MQ=2)
atatTTGCAGGAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.GGGC..GAAG.CCAGAGGGGGGCCGGGC.C.C.CCC.TGCCCcgcc > 1:1654281/1‑99 (MQ=17)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCcggc > 1:1947906/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCcggcg > 1:2956470/1‑101 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGt < 2:1530092/101‑1 (MQ=17)
ttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTc > 1:3754824/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTcc > 1:3887436/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTcc > 2:1798383/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGGcc > 1:3779656/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGCcc > 1:3021628/1‑101 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.GAGCG.C.CGCCC.TGCCCCGGCGGTcc > 2:1902392/1‑101 (MQ=18)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCcggcggggcgt > 2:4463382/1‑96 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCCGAGGGGGGC.AGCGCC.C.CCC.TCCCCCAGCCGTCCCTggc > 2:887342/1‑101 (MQ=9)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCCGCGGTCCGTggcgg > 2:3144664/1‑101 (MQ=17)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTggcggc > 1:991197/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCt < 2:5000912/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCt > 1:3099186/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCtt < 2:2912032/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTg < 1:4969488/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTCCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGa < 2:1609947/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcg < 2:3017367/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcgg > 1:4469323/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCA.CAC.CCC.TGCCCCGGCGGTCCGTGGCGGGG.CCCTGAcgg > 1:836473/1‑101 (MQ=12)
tGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGAcgggc < 1:740217/101‑1 (MQ=17)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:76190/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:2277111/1‑101 (MQ=18)
ttCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCggggg > 2:3039833/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCC.GGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TCCCCCGGCGGTCCGTGGCGGCG.CCTTGACCGGGgggggg > 2:1239428/1‑100 (MQ=9)
cATCTTGCCCGAAATATCCC.GGGGGGAGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGgcg > 1:531678/1‑101 (MQ=18)
aTCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGgcgg > 1:2168370/1‑100 (MQ=18)
aTCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGgcgc > 2:3072130/1‑101 (MQ=18)
tCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGcgcg > 2:364132/1‑101 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg < 2:4405102/101‑1 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg > 1:3428738/1‑101 (MQ=18)
cTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCgg > 1:3041789/1‑101 (MQ=18)
tGCCCGAAATATCCCGGGGGGGGGAA.TGGG..G.AA.CCAAGGGGGGGGAAGGG.C.C.CCCTTGCCCCGCCGGCCCG.GGCGGGGCCCTTGACGGGGGGGGGGGGggg > 1:2060910/1‑101 (MQ=255)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGc < 1:3325569/101‑1 (MQ=18)
tGCCCGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGc < 2:1954602/101‑1 (MQ=18)
gCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AA.GCCAGAGGGGGCCAGCGCC.C.CCC.TCCCCCGGCGGTCCGTGGCGGCG.CCTTCACCTGGGGGGGCGCggggc > 2:621723/1‑99 (MQ=9)
gccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAt > 2:2132524/2‑101 (MQ=18)
cccGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCAt < 1:2606143/101‑1 (MQ=18)
cGAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTa < 2:2942581/101‑1 (MQ=18)
gAAATATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTaa < 1:2443983/101‑1 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGGCGGGCGGGGGCGCGGGCATTAAc < 2:1701948/101‑1 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:4202196/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:2218909/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAAc > 1:3127500/1‑101 (MQ=18)
aaaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCCCGGGGATTAAc > 2:1249508/1‑101 (MQ=18)
aaTATCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.AAGAGCC.C.CCC.TGCCCCGGCGGACAGCGGCGGAG.ACTTGACGGGGGGGGGCCCGGGCGTCAAcc > 1:4022190/1‑101 (MQ=2)
atatCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGTGGGCATTAACCg < 1:2733563/101‑1 (MQ=18)
atatCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCg > 2:4307076/1‑101 (MQ=21)
tatCCG.GGGGGGTGAA.TGCC..GAAG.CCAGAGGGGGGCAGCCC.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGa < 1:2004203/101‑1 (MQ=25)
tatCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 1:4144164/1‑101 (MQ=21)
atCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaa < 2:551369/101‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:4718866/101‑1 (MQ=21)
tCCC.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa > 1:3623977/1‑101 (MQ=21)
ccc.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 1:234970/101‑1 (MQ=21)
ccc.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt < 2:3722167/101‑1 (MQ=21)
cc.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:1143981/101‑1 (MQ=21)
c.GGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.CAC.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGGGGGGGCGCGGGCGTTAACCGAAATTg > 2:298908/1‑101 (MQ=21)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:4782575/101‑1 (MQ=25)
gggggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:3177538/1‑101 (MQ=25)
gggTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc > 2:2360260/1‑101 (MQ=25)
tGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:4054721/101‑1 (MQ=25)
gaagccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGa > 1:648424/9‑101 (MQ=38)
gaagccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGAGGCTGCGa > 2:2632481/9‑101 (MQ=37)
aagccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACCGATGCTGCGAt > 2:4875272/8‑101 (MQ=38)
aagccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGAt > 2:3439191/8‑101 (MQ=38)
agccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATc < 1:242318/95‑1 (MQ=38)
agccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATc < 2:4872508/95‑1 (MQ=38)
gccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATcc > 2:3891015/6‑101 (MQ=38)
ccagaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt > 2:2167036/5‑101 (MQ=38)
cagaGGGGGGCATCGC.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTc < 2:2803191/98‑1 (MQ=255)
agaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTcc > 2:546995/3‑100 (MQ=38)
agaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg > 2:1177990/3‑101 (MQ=39)
agaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg > 1:1358706/3‑101 (MQ=39)
gaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGc > 2:3853848/2‑101 (MQ=39)
gaGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGc > 2:2856510/2‑101 (MQ=39)
aGGGGGGC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCAcc > 2:4971476/1‑101 (MQ=255)
ggggggC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGccc < 2:3372314/101‑1 (MQ=255)
ggggggC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTCGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGccc < 1:3498171/101‑1 (MQ=255)
gggggC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGGGGGCATTAACCGAAATTGCAACAGAAGCTGCGAACCCCCCCCa > 2:3510705/1‑101 (MQ=255)
gggggC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCa < 2:2147296/101‑1 (MQ=255)
gggggC.AGCGCC.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCa < 1:4481659/101‑1 (MQ=255)
|
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCC.GGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.C.CCC.TGCCCCGGCGGTCCGTGGCGGCG.CCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493977‑2494170
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 39 ≤
ATCG
|