| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 774,622 | 2 bp→TC | 100% | intergenic (‑76/+43) | oppB1 ← / ← oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 774,622 | 0 | G→T | 100.0% | 13.4 | 7 | intergenic (‑76/+44) | oppB1/oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
| Reads supporting (aligned to +/- strand): new base (5/0): ref base (1/0): total (7/0) | ||||||||||
| * | NC_014034 | 774,623 | 0 | G→C | 100.0% | 19.2 | 7 | intergenic (‑77/+43) | oppB1/oppA1 | oligopeptide ABC transporter permease OppB/oligopeptide ABC transporter periplasmic oligopeptide‑binding protein OppA |
| Reads supporting (aligned to +/- strand): new base (7/0): ref base (0/0): total (7/0) | ||||||||||
CGGGGGGGCGCCGGGCCGCA......GCGCCCCCCCCCCCCTGGGGAACCGGCCCTGCC.GG.T.CGA.CGTACGGTCTCTTATCCTGCGATCACTTCGCCCGCGACCAGTCGGCCACGTTCCAGTAT > NC_014034/774585‑774702
||
cGGGGGGGCGCCGGGCCGCAGGCCCGGCGCCCCCCCGCCCGGGGCGGACCGGCCCTGCC.GG.TCCGACCCTACGGTCTCTTATCCTGCGATCACTTCGCCcg > 1:4468860/1‑101 (MQ=255)
caggcccggcgcCCCCCCGCCCGGGTCGGACCGGCCCTGCC.GG.TCCGACCCTACGGTCTCTTATCCTGCGATCACTTCGCCCGCGACCAGTCGGCCACGtt > 1:88244/9‑101 (MQ=255)
caggcccggcgcCCCCCCGCCCGCGTCGGACCGGCCCTGCC.GGCC.CGACCCCACGGTCTCTTATCCTGCGATCACTTCGCCCGCGACCAGGCGGCCACggt > 2:2452122/9‑99 (MQ=255)
aggcccggcgcCCCCCCGCCCGGGTCGGACCGGCCCCGCCGGG.C.CGACCCTACCGGCTCTTATCCTGCGATCACTTCGCCCGCGACCCGACGGCCACGTTc > 1:4561874/8‑101 (MQ=255)
ggcccggcgcCCCCCCGCCCGGGTCGGACCGGCCCTGCC.GG.TCCGACCCTACGGTCTCTTATCCTGCGATCACTTCGCCCGCGACCAGTCGGCCACGTTcc > 1:1432018/7‑101 (MQ=255)
cccggcgcCCCCCCGCCCGGGTCGGACCGGCCCTGCC.GG.TCCGACCCTACGGTCTCTTATCCTGCGATCACTTCGCCCGCGACCAGGCGGCCACGTTCCAg > 2:4668931/5‑101 (MQ=255)
ggcgcCCCCCCGCCCGGGACGGACCGGCCCTGCC.CG.TCCGACCCTACGGTCTCTTATCCTGCGATCCCCTCGCCCGCGACCCGTCGGCCCCGTTCCAATAt > 2:2109406/2‑101 (MQ=255)
||
CGGGGGGGCGCCGGGCCGCA......GCGCCCCCCCCCCCCTGGGGAACCGGCCCTGCC.GG.T.CGA.CGTACGGTCTCTTATCCTGCGATCACTTCGCCCGCGACCAGTCGGCCACGTTCCAGTAT > NC_014034/774585‑774702
Base quality scores:
ATCG
< 3 ≤
ATCG
< 6 ≤
ATCG
< 15 ≤
ATCG
< 25 ≤
ATCG
< 38 ≤
ATCG
|