| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,253,890 | +GGGGC | 100% | intergenic (+48/+43) | RCAP_rcc01181 → / ← hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,253,890 | 1 | .→G | 100.0% | 135.5 | 92 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (49/6): ref base (14/23): total (63/29) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.72e-07 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.57e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 2 | .→G | 100.0% | 135.5 | 92 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (49/6): ref base (14/23): total (63/29) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.72e-07 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.51e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 3 | .→G | 100.0% | 135.5 | 92 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (49/6): ref base (14/23): total (63/29) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.72e-07 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 5.57e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 4 | .→G | 100.0% | 135.5 | 92 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (49/6): ref base (14/23): total (63/29) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.72e-07 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.24e-01 | ||||||||||
| * | NC_014034 | 1,253,890 | 5 | .→C | 100.0% | 136.8 | 92 | intergenic (+48/+43) | RCAP_rcc01181/hisH | hypothetical protein/imidazole glycerol phosphate synthase subunit HisH |
| Reads supporting (aligned to +/- strand): new base (49/6): ref base (14/23): total (63/29) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.72e-07 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.75e-01 | ||||||||||
Only 100 of 114 total aligned reads displayed.
TGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAT > NC_014034/1253790‑1253955
|||||
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg > 2:1720965/1‑101 (MQ=255)
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg < 1:1621447/101‑1 (MQ=255)
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg < 2:1879253/101‑1 (MQ=255)
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg < 2:1937031/101‑1 (MQ=255)
tGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg < 2:5648494/101‑1 (MQ=255)
tGGGGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCGCTAAATACCT.....CGGGGGTGCg > 1:6845983/1‑101 (MQ=255)
ggTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....g < 1:877375/101‑1 (MQ=255)
ggTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....g < 2:1358955/101‑1 (MQ=255)
ggTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....g > 2:3181262/1‑101 (MQ=255)
gTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....gg < 2:6587462/101‑1 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....ggg < 2:2009577/101‑2 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....ggg > 1:4191827/1‑100 (MQ=255)
tGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....ggg < 2:2675964/101‑2 (MQ=255)
gCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....gggg > 2:380820/1‑99 (MQ=255)
gCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....gggg > 1:2240352/1‑99 (MQ=255)
gCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCg.....gggg < 2:6904712/101‑3 (MQ=255)
cTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCTCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........c < 2:4863584/101‑1 (MQ=255)
cTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........c < 2:6583230/101‑1 (MQ=255)
cTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........c > 1:4286900/1‑101 (MQ=255)
tGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cg > 2:5118987/1‑101 (MQ=255)
tGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cg < 2:6586279/101‑1 (MQ=255)
tGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cg > 2:6798983/1‑101 (MQ=255)
gggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cgg > 2:5088940/1‑100 (MQ=255)
gggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cgg > 1:159875/1‑100 (MQ=255)
ggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cgga < 1:2607609/101‑3 (MQ=255)
ggCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cgga < 1:5119247/101‑3 (MQ=255)
gCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggag < 1:5892588/101‑4 (MQ=255)
gCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggag > 1:5686398/1‑98 (MQ=255)
gCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggag < 1:5150533/101‑4 (MQ=255)
gCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggag < 2:4043993/101‑4 (MQ=255)
gCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggag > 1:2129304/1‑98 (MQ=255)
cAAGCTCGTCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagc < 2:2734914/101‑5 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagcc < 1:6168100/101‑6 (MQ=255)
aaGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagac > 2:4426773/1‑96 (MQ=255)
aGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagccc < 1:5741023/101‑7 (MQ=255)
gCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagcccc < 2:3628615/101‑8 (MQ=255)
gCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagcccc < 2:751006/101‑8 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagccccc < 2:397328/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagccccc < 2:4909667/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagccccc < 2:2072434/101‑9 (MQ=255)
cTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagccccc < 1:5251298/101‑9 (MQ=255)
tCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagcccccg > 1:4060888/1‑92 (MQ=38)
tCGGCTTCCAGAACGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagcccccg > 1:6308404/1‑92 (MQ=37)
cGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGg.........cggagcccccgc > 1:5236487/1‑91 (MQ=38)
cGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa > 2:4888439/1‑101 (MQ=12)
cGAAAAACA.CGGATCCCGCCCCTCTCTCATCTTGCCCTAAATACCT.....GGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaa < 2:5420628/101‑1 (MQ=2)
gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa > 2:385965/1‑101 (MQ=12)
gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa > 1:5449076/1‑101 (MQ=12)
gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa > 2:2652471/1‑101 (MQ=12)
gAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGAGCGGCGCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa > 2:2380062/1‑101 (MQ=12)
aaaTAAC.CCGCCCCCCCCCCCCTCTCATCTTCCCCTAACTACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt < 2:599203/101‑1 (MQ=2)
aaaTAAACCCGCCCCCGCCCCGCTCTCATCTTGCCCTAAATCCCG.....GGGGGGTGGGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGaaa < 2:6528371/101‑1 (MQ=2)
aaaTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAAt > 1:5369622/1‑101 (MQ=9)
aaTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATc > 2:358374/1‑101 (MQ=9)
aTAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATcc > 1:6269538/1‑101 (MQ=9)
tAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct > 1:3013033/1‑101 (MQ=9)
tAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct > 1:2339168/1‑101 (MQ=9)
taacccaaccccgccccgcTCTCATCTTGCCCTAAATCCCTGGGGGGGGGGGGGGG.....GGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct < 2:3210659/92‑1 (MQ=2)
aaacccacccccgccccgcTCTCATCTTGCCCTAAATCCCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCct < 2:1711473/92‑1 (MQ=2)
aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 1:1626629/1‑101 (MQ=9)
aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 2:3964083/1‑101 (MQ=9)
aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 2:3574807/1‑101 (MQ=9)
aaa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctc > 2:5772795/1‑101 (MQ=9)
aa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct > 1:6587515/1‑101 (MQ=9)
aa.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCctct > 1:727808/1‑101 (MQ=9)
cccgccccccccccgcTCTCATCTTCCCCTAAATCCCG.....CGGGGGTGCG.....GGGGCGGACCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc < 2:4751351/95‑1 (MQ=2)
cccGACCCCGCCCCGCTCTCATCTTGCCCTAAATCCCT.....GGGGGGGGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc < 2:3034648/100‑1 (MQ=2)
cccGACCCCCCCCCGCTCTCATCTTGCCCTAAATCCCT.....CGGGGGTGCG.....GGGGGGGACCCCCCGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctc < 2:2836045/100‑1 (MQ=9)
ccGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCtctcc > 1:2119061/1‑100 (MQ=9)
cgcccccgccccgcTCTCATCTTGCCCTAAATCCCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCAc < 2:5620518/97‑1 (MQ=2)
gATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACg > 2:5101049/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 1:1179820/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 2:316377/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 1:1996565/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 1:3095966/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 1:4584641/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 1:4803610/1‑101 (MQ=9)
aTCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACgg > 2:1139332/1‑101 (MQ=9)
tCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGc > 1:1545029/1‑101 (MQ=9)
gcccctcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCCATGGGAAATGCTCTCACGGCTTcc > 2:3222714/1‑101 (MQ=2)
gccccgcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc > 1:1399708/1‑101 (MQ=9)
cccccgcTCTCATCTTGCCCTAAACCCCT.....CGGGGGTGGGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTcc < 2:5218709/100‑1 (MQ=9)
ccccgcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCa > 2:2669166/1‑101 (MQ=9)
gcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc > 2:2015444/1‑101 (MQ=9)
gcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc > 1:6839975/1‑101 (MQ=9)
gcTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTc > 1:3758991/1‑101 (MQ=9)
gcTCTCATCTTG.CCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa > 1:4312414/1‑101 (MQ=2)
ctctCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa > 1:7125039/1‑101 (MQ=9)
ctctCATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCa > 2:2603671/1‑101 (MQ=9)
tctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg > 2:5053429/1‑101 (MQ=9)
tctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAg > 2:6389894/1‑101 (MQ=9)
tctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGGTCAg > 2:2293350/1‑101 (MQ=9)
ctcATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAgg > 2:3575244/1‑101 (MQ=9)
cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCANGGCTTCCAGTTCAggga > 2:3059400/1‑99 (MQ=9)
cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa > 2:3697327/1‑101 (MQ=9)
cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa > 1:2029490/1‑101 (MQ=9)
cATCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGaa > 1:4424794/1‑101 (MQ=9)
aTCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGTCTTCCAGTTCAAGaaa > 2:459963/1‑101 (MQ=2)
aTCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGGGCGGGGCCCCCGCCGGGCCGCCTCGGGGAAAGGCGAGGGGAAATCCTCCCACGGCTTTTAGTTCGGGaaa > 2:3194037/1‑101 (MQ=2)
tCTTGCCCTAAATACCT.....CGGGGGTGCGGGGGCGGAGCCCC.....CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAt > 2:632473/1‑101 (MQ=9)
|||||
TGGTGCTGGGCAAGCTCGGCTTCCAGACCGGCTGCGCCTTCGAGGCGAAATAAA.CCGATCCCGCCCCGCTCTCATCTTGCCCTAAATACCT.....CGGGGGTGCG.....GGAG.........CGCCGGGTCGCCTCGGCGAAAGCCGAGGCGAAATCCTCTCACGGCTTCCAGTTCAGGAAAT > NC_014034/1253790‑1253955
Base quality scores:
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|