| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,185,930 | +C | 87.6% | intergenic (+203/‑302) | mtlK → / → RCAP_rcc02028 | mannitol 2‑dehydrogenase/FeoA family protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,185,930 | 1 | .→C | 87.6% | 30.5 ‑1.6 ‑0.8 | 89 | intergenic (+203/‑302) | mtlK/RCAP_rcc02028 | mannitol 2‑dehydrogenase/FeoA family protein |
| Reads supporting (aligned to +/- strand): new base (32/46): ref base (2/9): total (34/55) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.94e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.61e-01 | ||||||||||
Only 100 of 106 total aligned reads displayed.
GCGGGGGCTCCG.CCCCGCACCCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..CCC..GCCGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCAC > NC_014034/2185830‑2186027
|
gCGGGGGCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCCAAGGCCTTG.TTTTGATGGGACAAGAAAAGCCGAA.CCG.c > 1:31410/1‑101 (MQ=25)
cGGGGGCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGGCTTG.TTTTGATCGCACAAAAAAAGCCGAA.ACggc > 2:3291219/1‑99 (MQ=21)
gggggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.ccc > 1:4855030/1‑101 (MQ=37)
tctgCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.cccc < 2:2830474/98‑1 (MQ=37)
ggggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGGACAAGAAACGCCGAA.CCG.cccc > 2:5186685/1‑101 (MQ=37)
ggggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.cccc < 1:1566177/101‑1 (MQ=37)
ggggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.cccc < 2:1876699/101‑1 (MQ=37)
gggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCCCAAGAAACGCCGAA.CCG.ccccc < 2:5930044/101‑2 (MQ=37)
gggCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.ccccc < 1:3143140/101‑2 (MQ=37)
gatcTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.ccccc < 2:1005038/98‑2 (MQ=37)
gcgccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.ctt < 1:2312366/94‑1 (MQ=37)
gCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.ccccaga > 1:2830576/1‑98 (MQ=37)
gCTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.ctt < 2:5545759/101‑1 (MQ=37)
cTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.cttt < 1:835836/101‑2 (MQ=37)
cTCCGCCCCCGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCCAA.CCG.CCCC.cttt > 2:5491341/1‑100 (MQ=37)
tccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.ctttc < 1:103540/96‑3 (MQ=37)
tccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.ctttc < 2:6510797/96‑3 (MQ=37)
tccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.ctttc < 1:1395103/96‑3 (MQ=37)
tCCT.CCCCCCCCCCCCCGGCCTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.ctttc < 2:2283069/101‑3 (MQ=255)
ccgcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCG.cccccagatc > 1:1005073/5‑95 (MQ=38)
gcccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCAcc > 1:2537826/3‑101 (MQ=255)
ccccccacacccccGGCTTATTTACCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCAcc < 2:6925011/92‑1 (MQ=37)
cccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCt < 2:6312669/100‑1 (MQ=38)
ccccGCA.CCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCtt < 2:2719504/101‑1 (MQ=38)
cgcacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGc > 1:3950526/5‑101 (MQ=255)
gcacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCt < 2:5404053/98‑1 (MQ=38)
gcacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCt < 2:4368177/98‑1 (MQ=38)
cacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGGCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTc > 2:1308890/3‑101 (MQ=38)
cacccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTc < 2:1450717/99‑1 (MQ=39)
acccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCa > 2:4295559/2‑101 (MQ=39)
acccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCa < 1:536204/100‑1 (MQ=39)
cccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCaa < 2:6731258/101‑1 (MQ=255)
ccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCaaa < 1:3788312/101‑1 (MQ=255)
ccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCaaa < 1:4025265/101‑1 (MQ=255)
ccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCaaa < 2:2811932/101‑1 (MQ=255)
ccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCaaa < 2:6039369/101‑1 (MQ=255)
ccccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATAGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCaaa > 1:4187494/1‑101 (MQ=255)
cccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAat < 1:6162744/101‑1 (MQ=255)
cccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAat > 1:930103/1‑101 (MQ=255)
ccGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCCAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAata > 2:4554925/1‑101 (MQ=255)
cGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGG..CAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATcc < 2:5230863/101‑1 (MQ=255)
ggCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATc < 1:4889155/101‑1 (MQ=255)
ggCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATc < 1:6031272/101‑1 (MQ=255)
gCGTATTTATCCCAAGAAAACGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATCTcc < 1:5603659/101‑1 (MQ=255)
gCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATcc < 1:1448778/101‑1 (MQ=255)
gCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATcc > 1:2329222/1‑101 (MQ=255)
gTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCg < 1:4295781/101‑1 (MQ=255)
tATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCgg < 1:877913/101‑1 (MQ=255)
tATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCgg < 2:6304778/101‑1 (MQ=255)
aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCgcg > 1:5196694/1‑99 (MQ=255)
aTTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCcgg > 2:5313318/1‑101 (MQ=255)
tttATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCgggg > 1:4244709/1‑101 (MQ=255)
aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCggggggc > 1:2203777/1‑99 (MQ=38)
aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCgggggcc > 1:7028227/1‑99 (MQ=39)
aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTc > 1:813274/1‑101 (MQ=255)
aTCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTc < 2:4780087/101‑1 (MQ=255)
tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTcc < 2:290266/101‑1 (MQ=255)
tCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGCGGGGcc > 2:5413002/1‑101 (MQ=255)
cccAAGGAAAAGCGGCGGCGTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCg < 2:3274710/101‑1 (MQ=38)
cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCg > 1:950348/1‑101 (MQ=255)
cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCg > 2:4800631/1‑101 (MQ=255)
cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCg > 1:2551045/1‑101 (MQ=255)
cccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCg < 2:1529421/101‑1 (MQ=255)
ccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCgg < 2:6481762/101‑1 (MQ=255)
ccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCgg < 2:5638197/101‑1 (MQ=255)
ccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCgg > 1:2681067/1‑101 (MQ=255)
ccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCgg > 1:4810337/1‑101 (MQ=255)
ccAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCAAAAGAAACGCCGAACCCC.CCCC.TTTCACCTTGGCTCAAATATCCCGGGGGGCCgg > 1:3308552/1‑101 (MQ=38)
aGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCggggg > 1:5735974/1‑101 (MQ=255)
gAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGc < 1:5915894/101‑1 (MQ=255)
gAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGc < 2:3308436/101‑1 (MQ=255)
gAAAAAGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGc < 1:5010120/101‑1 (MQ=255)
aaaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCgg > 2:6450543/1‑101 (MQ=255)
aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGa < 2:4091212/101‑1 (MQ=255)
aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGa > 1:580685/1‑101 (MQ=255)
aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGa > 2:5356732/1‑101 (MQ=255)
aaaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGa < 2:2575137/101‑1 (MQ=255)
aaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAg < 1:4249842/101‑1 (MQ=255)
aaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAg < 2:3261211/101‑1 (MQ=255)
aaGCAGCGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAg > 2:387688/1‑101 (MQ=255)
agcagcGGCTTGCCCCGAAGGCCTTG.TTTTGTTGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..c < 1:4555164/101‑1 (MQ=37)
agcagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..c < 1:4800874/101‑1 (MQ=255)
agcagcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..c > 1:6706418/1‑101 (MQ=255)
gcGGCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTTACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..ccccc < 2:3388154/101‑3 (MQ=37)
cGGCTTGCCCCGACGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccg < 2:6559502/101‑4 (MQ=25)
ggCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccgg > 2:5097781/1‑97 (MQ=25)
ggCTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccgg > 2:1095687/1‑97 (MQ=25)
cTTGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGGGGGG..Ccc..gcggcg > 2:399100/1‑97 (MQ=25)
ttGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccggcgg > 2:1013453/1‑94 (MQ=25)
tGCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccggcggg > 2:5563753/1‑93 (MQ=21)
tccccGACGGGCTTG.TTTTGATGGCAGAAGAAACGTCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATAGCCCCGGCGGCCAGGGGCGGCG..cccctggcggag > 2:4624593/2‑92 (MQ=255)
gCCCCGAAGGCCTTG.TTTTGATGGCACAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccggcgggg > 1:190550/1‑92 (MQ=21)
ccccGAAGGCCTTG.TTTTGATGGCCCAAGAAACGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..cccccggcgggtc < 2:7027853/101‑11 (MQ=18)
aaaCGCCGAA.CCGCCCCC.TTTCCCCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcc < 2:4176276/101‑1 (MQ=2)
ccGCCGAC.CCGCCCCC.TTTCCCCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGCC..CCCCGGGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc < 1:6478459/100‑1 (MQ=2)
aCGCCGAC.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCGGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACAcccc < 1:6207504/101‑1 (MQ=2)
cGCCGAA.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCa < 2:5735672/101‑1 (MQ=0)
ccGAC.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGTTCCGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAgc < 2:2203682/101‑1 (MQ=0)
ccGAC.CCGCCCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAgc < 1:1013488/101‑1 (MQ=2)
ccG.CCCCTTTTCGCCTTGGCTCAAATATCCCGGGGGTCGGGGGGGGGAGCCCCC..GGCGGGTCGCCTCGGGCA..AAGCCCGAGGCGAAACACCCCAGCGCCac < 2:5196429/101‑1 (MQ=2)
|
GCGGGGGCTCCG.CCCCGCACCCCCCGGCGTATTTATCCCAAGAAAAAGCAGCGGCTTGCCCCGAAGGCCTTGTTTTTGATGGCACAAGAAACGCCGAA.CCG.CCCC.TTTCACCTTGGCTCAAATATCCCGGGGGTCCGGGGGCGGAG..CCC..GCCGGGTCTCCTCCGGGAGCAAGGCCGAGGCGAGACACCCCAGCGCCAC > NC_014034/2185830‑2186027
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 26 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|