| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,060 | +A | 4.9% | intergenic (+108/‑134) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,060 | 2 | .→A | 4.9% | 41.1 0.0 ‑0.8 | 247 | intergenic (+108/‑134) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/6): ref base (126/109): total (132/115) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.54e-01 | ||||||||||
Only 100 of 265 total aligned reads displayed.
CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493960‑2494152
|
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc < 2:1639586/101‑1 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g > 2:5881401/1‑101 (MQ=255)
ctccccccCGTCCGCAAGCCGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.a < 1:848607/98‑1 (MQ=18)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 2:6425092/97‑7 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga < 1:2421694/98‑8 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCa < 1:4841224/101‑1 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagc > 1:5933131/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:4103598/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:4364566/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 2:5033816/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAACATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 1:6144098/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc > 1:2701939/1‑101 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc > 2:30725/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c > 2:6585192/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.c > 2:2850360/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCaccgcccc > 2:5968552/1‑94 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.cc > 1:7090691/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.cc < 2:718542/101‑1 (MQ=17)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCG.cc.cc.c < 2:2668826/101‑1 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cc < 2:120243/101‑2 (MQ=17)
cccccGTGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cct < 1:3292237/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cct < 2:3212537/101‑3 (MQ=17)
cGGGAAATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCGG.CC.CC.CTGccc > 2:3513234/1‑101 (MQ=18)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.CC.CTGcccc < 2:6159028/101‑1 (MQ=0)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGcccc < 2:1733916/101‑1 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGcccc > 2:1766453/1‑101 (MQ=17)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcg > 1:5969404/1‑101 (MQ=18)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcg > 2:3475203/1‑101 (MQ=18)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcg < 2:5653150/101‑1 (MQ=17)
gATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.CC.CTGCCCcgc > 1:6081322/1‑100 (MQ=2)
atatTTGCAGCAAGATGAACCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcggc < 1:6198708/101‑1 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcggcg > 2:2512571/1‑101 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcggcggg > 1:3783275/1‑100 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.CC.CC.CTGCCCcgccggat < 2:5078699/101‑3 (MQ=2)
ttGCAGCAAGATTAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTc < 2:2494455/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTcc < 2:2441416/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTcc > 2:6090311/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTcc < 1:6766555/101‑1 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTgg > 1:4493287/1‑101 (MQ=18)
aaGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGCCCGTggcg > 1:3383889/1‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTggcgg > 1:3811002/1‑101 (MQ=17)
tggaaaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTggcggc > 2:1944999/5‑101 (MQ=17)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGGCCGGggcggc > 1:3877195/1‑101 (MQ=17)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGgcgc > 2:3155880/1‑101 (MQ=18)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGA..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGgcgc > 2:4546162/1‑101 (MQ=18)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGGGGCGGCGcc > 1:2865893/1‑101 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:4070976/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:2830502/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGACC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt > 2:4633550/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATGCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:229743/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg > 2:6531082/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:4103792/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:375861/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATAGCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:1348192/101‑1 (MQ=17)
ccGGATGCTTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGa < 2:3555338/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 1:4085201/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:4260213/1‑101 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:3847130/1‑101 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 1:1574503/101‑1 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcg > 2:4196347/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 2:3644775/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:6252574/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGCGGGGGGC.AGCGCCC.CC.CTGCTCCGGAGGTCCGTGGCTGCGCCTTGACGCGCggggg > 2:5769270/1‑101 (MQ=9)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCTC.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1009584/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGCCGGGCggggg > 2:109252/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1828257/101‑1 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCGCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 1:5355279/1‑100 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:1717802/101‑1 (MQ=18)
tCATCTGGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:3608431/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:6181575/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcccg > 1:6141678/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 2:2057294/1‑101 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg > 1:4032261/1‑101 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg < 2:316532/101‑1 (MQ=18)
tgaccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.CCACC.CTGCCCCGGAGGAAAGTGAAGGCGCCTTGTCGGGCGGGGGGGCGGGc > 1:3451881/4‑101 (MQ=2)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc > 2:1837980/1‑101 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCAC.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCa > 1:5227265/1‑101 (MQ=21)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCa > 1:3185389/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:4137702/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:3557141/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGAGAA.TGGC..GAAG.CA.AGGGGGGGGCAGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:1136679/101‑1 (MQ=21)
cGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 1:6480476/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 2:1978730/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.CCACC.CTGCCCCGGCGGCCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:5320501/1‑101 (MQ=18)
tatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 2:4738294/1‑101 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:5776040/101‑1 (MQ=21)
ccGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:3084703/101‑1 (MQ=21)
cGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTg < 1:6586212/101‑1 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:4044295/1‑101 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:1473541/1‑101 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:6432116/101‑1 (MQ=25)
gggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCggagttccg > 2:2270481/1‑93 (MQ=18)
gggggTGAA.GGGC..GAAG.CCAGAGGGGGGCAGCCC.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa < 1:2273409/101‑1 (MQ=25)
gggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:2053421/101‑1 (MQ=25)
gggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 2:2738464/101‑1 (MQ=25)
ggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa > 2:5429476/1‑101 (MQ=25)
ggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:3354257/101‑1 (MQ=25)
ggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:4227174/101‑1 (MQ=25)
gTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCCC.CC.CC.GTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGAAATTGCAACAg < 1:1641926/101‑1 (MQ=25)
tGAA.TGGC..GAAG.CCAGAGGGCGGC.AGCG.CC.CCTCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:4654149/101‑1 (MQ=37)
|
CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493960‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|