| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,061 | +A | 93.8% | intergenic (+109/‑133) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,061 | 1 | .→A | 93.8% | 34.1 ‑0.2 ‑0.0 | 227 | intergenic (+109/‑133) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (120/93): ref base (7/7): total (127/100) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.83e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.54e-01 | ||||||||||
Only 100 of 261 total aligned reads displayed.
GCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.AG.CAGAAGGGGGGCAAGC.G.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493961‑2494152
|
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..g < 2:2157931/101‑1 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..g > 2:5881401/1‑101 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..g > 2:5334729/1‑101 (MQ=255)
ctccccccCGTCCGCAAGCCGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.a < 1:848607/98‑1 (MQ=18)
cTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.a < 2:4569864/101‑1 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aag < 2:3645725/101‑3 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aagcca < 1:6196766/101‑6 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aagcca < 1:6068986/101‑6 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aagccag < 2:6425092/97‑7 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aagccag > 2:1717738/5‑95 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aagccaga < 2:1889109/98‑8 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.aagccaga < 1:2421694/98‑8 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCa < 1:4841224/101‑1 (MQ=18)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCa > 2:3446682/1‑101 (MQ=18)
cGGCCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg < 2:4391520/101‑4 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 1:381771/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 2:5033816/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 2:3608282/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAACATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcgc > 1:6144098/1‑97 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.c > 2:6585192/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.cc > 1:7090691/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.cc < 2:718542/101‑1 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.cc.cc < 2:120243/101‑2 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.cc.cc > 1:222273/1‑100 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.cc.cct < 2:5687321/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cc.cc.cct < 2:4196590/101‑3 (MQ=17)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGC.G.CC.CC.CTGcccc < 2:6159028/101‑1 (MQ=0)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCcg > 1:5969404/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCcgg > 2:31145/1‑101 (MQ=18)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCcggc < 2:2034199/101‑1 (MQ=17)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGC.G.CC.CC.CTGCCCcgccg > 2:4669774/1‑101 (MQ=2)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCcgccg > 2:3164905/1‑101 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCcggcggg > 1:3783275/1‑100 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGt > 2:5128325/1‑101 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGt < 1:6135596/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTcc < 1:6766555/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTcc > 2:6090311/1‑101 (MQ=18)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCgg > 1:2661891/1‑100 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTggc > 2:3891263/1‑101 (MQ=18)
aaGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGCCCGTggcg > 1:3383889/1‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGGGGTCCGGgccgg > 1:2858290/1‑101 (MQ=9)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGGCCGGggcggc > 1:3877195/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGcc > 1:3054694/1‑101 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:2830502/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:4070976/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATGCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:229743/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg > 2:6531082/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:4103792/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATAGCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:1348192/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGa > 1:4464566/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:3499855/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 1:4085201/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:4260213/1‑101 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:2494285/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg < 2:3541273/101‑1 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg < 2:2701843/101‑1 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 1:1574503/101‑1 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcg > 2:3785539/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAccggcggg > 2:412531/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:6252574/1‑101 (MQ=17)
tttGATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CCGCCCCGGCGGTCCGTGTCGGCGGCTTGACGGGCgggg > 1:5613427/1‑101 (MQ=9)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGCGGGGGGC.AGC.GCCC.CC.CTGCTCCGGAGGTCCGTGGCTGCGCCTTGACGCGCggggg > 2:5769270/1‑101 (MQ=9)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCAGCT.C.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1009584/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGCCGGGCggggg > 2:109252/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1828257/101‑1 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCC..A.AG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc > 2:2498333/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCGCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 1:5355279/1‑100 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:1717802/101‑1 (MQ=18)
tCATCTGGCCCGAGATGTCGCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:6428046/101‑1 (MQ=16)
tCATCTGGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:3608431/101‑1 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 2:3206132/1‑101 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGG.AAGC.GCCC.CC.CTGCCCCGGCGGCCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 2:4780192/1‑101 (MQ=18)
tcgtGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:1837078/98‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:6181575/101‑1 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAAAGGGGGG.AAGCAC.CC.CC.CTGCCCCAGTGGTCCGTGGCGGCGCCTTGCCTGGCGGGGGCGGgg > 2:2397589/1‑101 (MQ=16)
ttGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg > 1:4032261/1‑101 (MQ=18)
tgaccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.CCACC.CTGCCCCGGAGGAAAGTGAAGGCGCCTTGTCGGGCGGGGGGGCGGGc > 1:3451881/4‑101 (MQ=2)
gCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCa > 1:3185389/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2824829/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:4137702/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 2:6003847/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:3557141/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGAGAA.TGG.C..GAAG.CA.AGGGGGGGGCAGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:1136679/101‑1 (MQ=21)
cGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 1:5881703/101‑1 (MQ=18)
gAAATCGCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 2:2631363/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGGATTAAc > 1:522527/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:2995275/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:1953456/101‑1 (MQ=18)
atatCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:1753697/101‑1 (MQ=21)
cGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTg < 1:6586212/101‑1 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:3245133/1‑101 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:4044295/1‑101 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:1473541/1‑101 (MQ=25)
ggggTGAA.TGG.C..GAAGCCAG.AGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCaa > 1:6449688/1‑101 (MQ=25)
gggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:2053421/101‑1 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:4227174/101‑1 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa > 2:5429476/1‑101 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:3354257/101‑1 (MQ=25)
gTGAA.TGG.C..GAAG.CCAGAGGGGGGCAGCC.C.CC.CC.GTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGAAATTGCAACAg < 1:1641926/101‑1 (MQ=25)
tGAA.TGG.C..GAAG.CCAGAGGGCGGC.AGC.G.CC.CCTCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:4654149/101‑1 (MQ=37)
|
GCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.AG.CAGAAGGGGGGCAAGC.G.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493961‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|