Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	974,303	+G	100%	intergenic (+183/+76)	RCAP_rcc00884 → / ← RCAP_rcc00885	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,303	1	.→G	100.0%	11.4	13	intergenic (+183/+76)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (6/7):  ref base (0/0):  total (6/7)

CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974204‑974380                                                                                                      |                                                                                 ccccGGCCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                                                                   <  1:1219392/101‑1 (MQ=255) ccccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                                                                   <  1:2389467/101‑1 (MQ=255)  cccGGACCCCCCAGCGTATTTGCACCAAGAAACAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                                                                 <  1:4739259/101‑1 (MQ=255)  cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                                                                 <  1:547310/101‑1 (MQ=255)   tctgACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gg                                                                                <  1:2690867/98‑1 (MQ=255)   ccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccccg                                                                                 >  1:2497111/1‑99 (MQ=255)     ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cggg                                                                              >  1:2327845/1‑101 (MQ=255)      gACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAAAATACC.agggg                                                                             >  2:4284499/1‑100 (MQ=38)      gACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggga                                                                             >  2:2690771/1‑100 (MQ=255)       aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTTCGACAAATATCCC.gggggg                                                                            >  2:1405557/1‑99 (MQ=255)       aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATTCC.gggggg                                                                            >  2:2046590/1‑99 (MQ=255)       aCCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggg                                                                            >  2:5998656/1‑99 (MQ=255)         cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGTGACAAATATACC.gggggacc                                                                          >  2:3033084/1‑97 (MQ=38)         cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtcc                                                                          >  1:3648991/1‑97 (MQ=255)         cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtcc                                                                          <  2:1084199/101‑5 (MQ=255)         cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggggggcn                                                                          >  1:3910510/1‑97 (MQ=255)          ccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccg                                                                         <  1:758928/101‑6 (MQ=255)            ccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cgggggccggg                                                                       >  2:6348916/1‑94 (MQ=255)             cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgggg                                                                      <  1:3862487/101‑9 (MQ=38)             cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgggg                                                                      <  2:4097199/101‑9 (MQ=38)              aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccggggg                                                                     <  2:6075685/101‑10 (MQ=38)                     ttGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAAATTCCC.GGGG...GTGCg.ggggcggggac                                                          >  2:5302021/1‑91 (MQ=255)                                                gacccGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCg                                    <  1:5370325/98‑1 (MQ=9)                                                gATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCg                                    <  2:3233735/101‑1 (MQ=14)                                                 gtCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGa                                   <  2:2186351/100‑1 (MQ=2)                                                       cATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGaa                             <  2:1176683/101‑1 (MQ=11)                                                           gccgctGCGCAGCGGCTTTTTTTCCCCTTGCGAAAAATACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATAc                         <  2:1639133/96‑1 (MQ=0)                                                               ctGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGCCCCCGCGGCAGCCGCGGCGGAAAAacccc                     >  1:7067401/2‑101 (MQ=0)                                                                  cgcAGCGGCTTGTTTTCCCCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCcggcc                  <  1:6548505/101‑1 (MQ=11)                                                                      gCGGCTTGTTTCCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCaa              <  2:2497017/101‑1 (MQ=11)                                                                         gCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGCCTCGGCGGCAGCCGCGGGGGAGGAACCCCGCCCCCACgc           >  2:3306430/1‑100 (MQ=2)                                                                               tttCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCGCCGGCAGCCGCGGGGAAATAAACCCGCCGCGACCGCCgggt     >  1:7068680/1‑99 (MQ=2)                                                                               tttCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCCCGGCGGCAGCCGGGGGGGAACAACCCCGCCGCCACCGcccggg     >  2:4290408/1‑97 (MQ=0)                                                                               tttCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGCGGCTCGGCGCCAGCCCGGGCGGAAAAACCCGCCCGCCACCGcccggc     >  1:2563992/1‑97 (MQ=2)                                                                                 tCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCTCGGCGGCCGCCGCGGCGAAAAACCCCCCCCCCCACCGccccgccc   >  1:476826/1‑95 (MQ=2)                                                                                  cACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtctc  <  2:5115621/101‑1 (MQ=11)                                                                                                      |                                                                                 CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTC  >  NC_014034/974204‑974380 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG