New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	392431 =	143 (0.460)	28 (0.090)	19/172	24.4	0.26	intergenic (‑79/+64)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	= 974293	15 (0.040)					intergenic (+173/+86)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: Position hash score below cutoff.

TTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG................................................................................................  <  NC_014034/392543‑392431 ...................................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGGGGGCGA  <  NC_014034/974293‑974199                                                                                                                                                                                                                                                                                          cccCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTT                                       <  2:6047052/98‑1 (MQ=0)                                                                         ccCCCGCCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTT                                      <  1:2702716/99‑1 (MQ=0)                                                                          cCCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTT                                     <  1:5725318/100‑1 (MQ=0)                                                                             ccCCGGGGGCCCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTT                                  <  1:417077/99‑1 (MQ=0)                                                                             CGCCGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTT                                  <  2:578430/101‑1 (MQ=0)                                                                                CGGGGGCTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGT                               <  1:6193489/101‑1 (MQ=0)                                                                                 GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                              >  2:3247618/1‑101 (MQ=0)                                                                                 GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTG                              >  1:6199692/1‑101 (MQ=0)                                                                                  GGGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGC                             <  1:3894695/101‑1 (MQ=0)                                                                                   GGGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCA                            <  2:3698667/101‑1 (MQ=0)                                                                                    GGCTCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAA                           <  1:4683064/101‑1 (MQ=0)                                                                                     GCTCCGCCCCCGGACCCCGGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAA                          <  2:79595/101‑1 (MQ=0)                                                                                      ccCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAAT                         <  1:1206241/99‑1 (MQ=0)                                                                                      CTCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAAT                         <  1:6392472/101‑1 (MQ=0)                                                                                       cCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                        <  1:20595/100‑1 (MQ=0)                                                                                       cCCGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                        <  1:1961341/100‑1 (MQ=0)                                                                                       TCCGCCCCCGGCCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATA                        <  2:1095969/101‑1 (MQ=0)                                                                                         CGCCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACG                      <  2:3495353/101‑1 (MQ=0)                                                                                           CCCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCT                    >  2:6075685/1‑101 (MQ=0)                                                                                            CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG                   >  1:3862487/1‑101 (MQ=0)                                                                                            CCCCGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTG                   >  2:4097199/1‑101 (MQ=0)                                                                                               CGGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGG                >  1:758928/1‑101 (MQ=0)                                                                                                ngcCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG               <  1:3910510/98‑1 (MQ=0)                                                                                                GGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG               >  2:1084199/1‑101 (MQ=0)                                                                                                GGACCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGG               <  1:3648991/101‑1 (MQ=0)                                                                                                  cCCCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT             <  2:5998656/100‑1 (MQ=0)                                                                                                  cCCCCCGGGATATTTGTCGAAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT             <  2:1405557/100‑1 (MQ=0)                                                                                                  cCCCCCGGAATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCAGCGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGT             <  2:2046590/100‑1 (MQ=0)                                                                                                                                                                                                                   TTTGACGCGGGACCGGCGGCCGGATTTGTGGGAGAAGTTCGGCAAGTGATTTCGCCTCGGCTGCGCCGAGGCGACCCGCCGGGGGCTCCGCCCCCGGACCCCCGGGATATTTG................................................................................................  <  NC_014034/392543‑392431 ...................................................................................................CCCCGGGATATTTGTCGCAAGGTGAAAACAAGCCGCTGCGCA.CGGCCATGCCGGATCCCGCCCGTCTGCTTTTTCTTGGTGCAAATACGCTGGGGGGTCCGGGGGGCGA  <  NC_014034/974293‑974199 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG