Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,198	5	.→G	100.0%	8.9	12	intergenic (+78/+181)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (5/7):  ref base (0/0):  total (5/7)

GGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACCCGCC.......G.......TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGTGC  >  NC_014034/974099‑974268                                                                                                                    |                                                                         ggATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACccgcc.......gg                                                                              >  1:2509724/1‑100 (MQ=255)     tttcccGCCCAACTCTGAACGCCGCCGGATGGCATTAAAAGGG.CCCCCCCGGGGG.CGCT.TTTTTTTTTC.GCCCCGCTGTCGCGTGGCGCCccgcc.......gggggg                                                                          <  2:1139674/97‑6 (MQ=255)      ttGCCGCGCACCTCTGACCGCCGCCGGAGGCCATTAAAAAGC.CCCCCCCCGGGG.CGCT.TTTTGTTTCC.GCCACGCTGTCGCGTGGCGCCccgcc.......ggggggc                                                                         <  2:6742867/101‑7 (MQ=255)       tGCCGCGCAACTCTGACCGCCGCCGGATGGCATTCAAAGGG.CGCCCCCGGGGG.CGCT.TTTTGTTTTC.GCCACGCTGGCGGGGGGCGCCccgcc.......ggggggct                                                                        <  2:4463654/101‑8 (MQ=255)       tGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACccgcc.......gggggggg                                                                        >  1:2778881/1‑94 (MQ=255)       ggCCGCGCAACTCGGAACGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCT.TTTTTTTTTC.GCCCCGCTGTCGCGGGGCGCCccgcc.......ggggggct                                                                        <  2:1804185/100‑8 (MQ=255)         ccGCGCACCTCTGACCGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CTCT.TTTTTTTTCC.GCCACGCTGTCGCGTGGCGCCccgcc.......ggggggcttc                                                                      <  2:3249040/101‑10 (MQ=255)           gcgcAACTCTGAACGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACCCGCC.......G.......GCgggcgctgc                                                             >  2:5816602/1‑93 (MQ=255)                                gagggCATTAAAAGGG.CCCCCCCGGGGG.CGCT.TTTTTTTTCC.CCCCCGCTGCCGGGTGGCCCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAt                                               <  1:5536687/98‑1 (MQ=2)                                gATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAt                                               >  1:4097393/1‑101 (MQ=25)                                 aTGGCA.TCCAAAGG.CCCCCCCCGGGGCCGCT.TTTTTTTTCC.GCCCCGCTGCCGCGGGGCGCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAtt                                              <  1:1497764/101‑1 (MQ=2)                                   gccactaaaagGG.CCCCCCCGGGGG.CTCT.TTTTTTTTTC.GCCCCGCTGGCGCGGGGCGCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTg                                            <  1:2183524/94‑1 (MQ=0)                                     ncntNAAAAGGCCCCCCCCCGGGC.CGCT.TTTTTTTTCC.CCCCCGCTGTCGCGGGGCGCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGc                                           <  1:6568342/98‑1 (MQ=0)                                        tCAAAAGG.GCCCCCCCGGGG.CCCCTTTTTGTTTCC.GCCCCGCTGCCGCGGGGCGCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCAcc                                        <  1:624960/101‑1 (MQ=2)                                          tcaagcgccgcccccGGGG.CGCC.TTTTTTTCTCGGCCCCGGTGCCGCGGGGCGCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCa                                       <  2:6649225/91‑1 (MQ=0)                                            aaGG.CCCCCCCCGGGC.CGTT.TTTTGTTTTC.CCCCCGCTGCCGCGGGGCGCCCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaa                                   <  1:4482319/101‑1 (MQ=2)                                                    cccccGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACCCGCC.......GGGGGGCTTCGCCCCCCCGACCCCCCCCCGGATTTGCACCCAGAAAAAGCaa                            >  1:2186446/1‑100 (MQ=16)                                                              cgcC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGGATTTGCACCAAAAAAAAACAGAcaggaggg                   >  2:4126256/1‑101 (MQ=12)                                                                       gTTTTC.GCCACGCTGTCGCGTGGCGACCCGCCGGGGGGGG.......TCCCCCCCCCGACCCCCCACCGCATTTTCCCCCAAAAAAAACAGACGGGGGGGGTCCGGcc           >  2:5370053/1‑100 (MQ=255)                                                                            c.GCCACGCTGTCGCGTGGCGACCCGCC.......GGGGGGGTTCGCCCCCCGGACCCCCCAGCGGATTTGCACCAAGAAAAAGCAGACGGGCGGGATGCCGCATgggc      >  2:6199373/1‑99 (MQ=19)                                                                              gCCACGCTGTCGCGTGGCGACCCGCC.......GGGGGGCTTCGCCCCCCCGGCCCCCCCGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGccc     >  2:1127144/1‑100 (MQ=12)                                                                                 aCGCTGTCGCGTGGCGACCCGCC.......GGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCgctg  >  2:3862324/1‑98 (MQ=18)                                                                                                                    |                                                                         GGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGG.CGCCCCCCGGGG.CGCC.TTTTGTTTTC.GCCACGCTGTCGCGTGGCGACCCGCC.......G.......TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGTGC  >  NC_014034/974099‑974268 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG