| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,048 | G→A | 4.5% | intergenic (+96/‑146) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,048 | 0 | G→A | 4.5% | 22.1 0.0 ‑0.0 | 264 | intergenic (+96/‑146) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/6): ref base (132/120): total (138/126) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.65e-01 | ||||||||||
Only 100 of 305 total aligned reads displayed.
AGTAAGGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGC.G.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCA > NC_014034/2493948‑2494147
|
gtaaggggggggCGCTGCCACCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgg < 1:2002858/96‑1 (MQ=18)
taaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATCTTTGCAGCAAGATGAAACCGGATGCCCTTCATCTTGCCCTAAATATCCCggg > 1:2370275/5‑101 (MQ=18)
taaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg > 1:6893672/5‑101 (MQ=255)
gaaggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg < 2:45779/97‑1 (MQ=255)
aagcggggggCGCTCCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg < 2:5713439/97‑1 (MQ=18)
aggggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggggg > 1:1594922/3‑101 (MQ=255)
gggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGt < 2:2918559/101‑1 (MQ=255)
ggggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTg < 1:6585162/101‑1 (MQ=255)
gggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa < 1:914235/101‑1 (MQ=255)
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa > 2:1473154/1‑101 (MQ=255)
ggggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGaa < 1:6962873/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCGCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:3404206/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:2840836/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:6616493/101‑1 (MQ=255)
gggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:4792651/101‑1 (MQ=255)
ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg > 2:3557005/1‑101 (MQ=255)
ggCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tg < 1:4921060/101‑1 (MQ=255)
gcgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.Tgg < 2:6960075/101‑1 (MQ=255)
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc < 2:1639586/101‑1 (MQ=255)
gcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..g > 2:5334729/1‑101 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag > 1:4097084/1‑99 (MQ=255)
ccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcca < 1:1689703/101‑6 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga < 1:2421694/98‑8 (MQ=255)
aaGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCa > 2:3446682/1‑101 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagc > 1:5933131/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcg > 1:381771/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 2:7107447/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.cc > 1:2701939/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.cc.c > 2:6585192/1‑101 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGC.G.cc.ccc < 2:2668826/101‑1 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.cc.cccc > 1:4038/1‑100 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.cc.cccc < 2:120243/101‑2 (MQ=17)
ccccGGGATATTGGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.cc.cccctg > 1:6308386/1‑98 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.cc.cccctgc < 2:4881664/101‑5 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGcccc < 2:1733916/101‑1 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGC.G.CC.CCCTGCCCcg < 2:6340765/101‑1 (MQ=0)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGC.G.CC.CCCTGCCCcgcc < 1:6014660/101‑3 (MQ=2)
atatTTGCAGCAAGATGAACCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCcggc < 1:6198708/101‑1 (MQ=17)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGC.G.CC.CCCTGCCCcgccg > 2:4669774/1‑101 (MQ=2)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCcggcg > 1:6142998/1‑101 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCcggcg > 2:2512571/1‑101 (MQ=17)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGCGGGCAGCC.C.CC.CCCTGCCCcggcgg > 2:6129407/1‑101 (MQ=18)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCcggcggg > 1:3783275/1‑100 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGC.G.CC.CCCTGCCCcgccggat < 2:6476340/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTcc < 1:6766555/101‑1 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCg < 1:315144/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTggc > 2:3891263/1‑101 (MQ=18)
tggaaaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTggcggc > 2:1944999/5‑101 (MQ=17)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCACGGCGGTCCGTAGCGgcgc > 2:1810558/1‑101 (MQ=17)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCAGTGGCGgcgc > 2:605370/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGcc > 1:3054694/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGcc > 1:334723/1‑101 (MQ=18)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGGGGCGGCGcc > 1:2865893/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCt > 2:2019594/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:5769379/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:4070976/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:375861/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGa > 2:4431943/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:3499855/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:4260213/1‑101 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:2494285/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg < 2:3541273/101‑1 (MQ=17)
gATGCCTTTCATCTTGCCCGAAATAGCCGGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg < 2:5558272/101‑1 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcg > 2:4196347/1‑101 (MQ=17)
ccTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcgg > 1:4061165/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 2:3644775/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAccggcggg > 2:412531/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCT.C.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1009584/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGCCGGGCggggg > 2:109252/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 1:740644/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCGCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggggg > 1:5355279/1‑100 (MQ=17)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:1717802/101‑1 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.CCGCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 1:6434785/1‑101 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:6181575/101‑1 (MQ=18)
cttggCCCGAAATTACCCGGGGGGGGGA.AGGCG.G.AG.CCCAGGGGGGGGCAGC.C.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 1:3611082/97‑1 (MQ=255)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg > 2:2057294/1‑101 (MQ=18)
cTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAAAGGGGGG.AAGCAC.CC.CCCTGCCCCAGTGGTCCGTGGCGGCGCCTTGCCTGGCGGGGGCGGgg > 2:2397589/1‑101 (MQ=16)
ttGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg < 2:316532/101‑1 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg < 1:3914345/101‑1 (MQ=18)
tgaccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.G.CCACCCTGCCCCGGAGGAAAGTGAAGGCGCCTTGTCGGGCGGGGGGGCGGGc > 1:3451881/4‑101 (MQ=2)
tGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGc > 2:1837980/1‑101 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCA.C.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCa > 1:5227265/1‑101 (MQ=21)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2824829/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:4137702/101‑1 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 2:5242518/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:3557141/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGAGAA.TGGC..GAAG.CA.AGGGGGGGGCAGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:1136679/101‑1 (MQ=21)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:2995275/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc < 2:3122171/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGCGCGGGGGCGCCGGCATTAAc > 1:4250618/1‑101 (MQ=18)
aaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:1912982/1‑101 (MQ=21)
aaTATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGGGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAcc > 1:609426/1‑101 (MQ=18)
tatCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 2:4738294/1‑101 (MQ=21)
atCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCGaa > 1:4643341/1‑101 (MQ=21)
tCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:5776040/101‑1 (MQ=21)
cGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGCAATTg > 2:5065239/1‑101 (MQ=21)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:3245133/1‑101 (MQ=25)
ggggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:1473541/1‑101 (MQ=25)
gggggTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGC.GCCC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:5922178/1‑101 (MQ=25)
gggggTGAA.GGGC..GAAG.CCAGAGGGGGGCAGCC.C.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa < 1:2273409/101‑1 (MQ=25)
|
AGTAAGGGGGGGCGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGC.G.CC.CCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCA > NC_014034/2493948‑2494147
Base quality scores:
ATCG
< 3 ≤
ATCG
< 16 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|