| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,066 | G→C | 6.0% | intergenic (+114/‑128) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,066 | 0 | A→C | 6.0% | 23.8 ‑0.6 ‑0.4 | 227 | intergenic (+114/‑128) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/7): ref base (115/91): total (126/101) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.72e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.77e-01 | ||||||||||
Only 100 of 236 total aligned reads displayed.
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.AG.CAGAAGGGGGGCAAGCG.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493977‑2494152
|
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagc < 1:3524300/101‑3 (MQ=18)
gCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagc > 2:5420299/1‑99 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 2:3608282/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 2:4364566/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcgc > 2:7107447/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc > 2:30725/1‑101 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc > 1:2701939/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCaccgcccc > 2:5968552/1‑94 (MQ=18)
tCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTAATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.c > 2:1641865/1‑101 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cc > 1:222273/1‑100 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGG.AGGCG.cc.cc.cc > 2:2902251/1‑100 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cca < 2:5732257/101‑3 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cctgc < 2:4881664/101‑5 (MQ=17)
ccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.cc.cc.cctgcc < 1:994628/101‑6 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGcccc > 1:6612003/1‑101 (MQ=17)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGcccc > 2:1766453/1‑101 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGCG.CC.CC.CTGCCCcg > 1:2857575/1‑101 (MQ=2)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcg < 2:5653150/101‑1 (MQ=17)
atatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGCG.CC.CC.CTGCCCcgcc < 1:6014660/101‑3 (MQ=2)
atatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcggc < 2:2034199/101‑1 (MQ=17)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcggcg > 1:6142998/1‑101 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCcggcggc > 1:1611925/1‑100 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGt < 1:6135596/101‑1 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGt < 2:6449675/101‑1 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGCG.CC.CC.CTGCCCcgccggat < 1:5945681/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTcc < 1:6524599/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTcc < 2:2441416/101‑1 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTcc > 1:3578887/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATACCGGGGGGTGAA.TGG.C..GAAGCCAGAGGGGGGACGGGC..CC.CC.CGGCCCCGGCGGTcc > 2:4252375/1‑101 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTgg > 1:4493287/1‑101 (MQ=18)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTgg > 1:5794103/1‑101 (MQ=18)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTggc > 2:3891263/1‑101 (MQ=18)
aaGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGCCCGTggcg > 1:3383889/1‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTggcgg > 1:3811002/1‑101 (MQ=17)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTggcggc < 1:6883905/101‑1 (MQ=17)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGGCCGGggcggc > 1:3877195/1‑101 (MQ=17)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGgcgc > 2:3155880/1‑101 (MQ=18)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCAGTGGCGgcgc > 2:605370/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGcc < 2:6581054/101‑1 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGGGGCGGCGcc > 1:2865893/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGCCCGTCGCGGCGCCt > 2:1856317/1‑101 (MQ=14)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:5769379/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:4070976/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGACC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt > 2:4633550/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.GGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:4201836/1‑101 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATGCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:229743/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:4103792/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATAGCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:1348192/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGa > 2:4431943/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:3499855/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGCGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:3456692/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCGTGAcg > 1:3440069/1‑101 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:2494285/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg < 2:3541273/101‑1 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg > 2:6118784/1‑101 (MQ=18)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 1:1574503/101‑1 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcg > 2:4196347/1‑101 (MQ=17)
ccTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcgg > 1:4061165/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 2:3644775/1‑101 (MQ=18)
cTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAccggcggg > 2:412531/1‑101 (MQ=17)
cTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcggg > 1:6252574/1‑101 (MQ=17)
tttGATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CCGCCCCGGCGGTCCGTGTCGGCGGCTTGACGGGCgggg > 1:5613427/1‑101 (MQ=9)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCAGCTC.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1009584/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1828257/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg > 1:740644/1‑101 (MQ=18)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCC..A.AG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc > 2:2498333/1‑101 (MQ=18)
tCATCTGGCCCGAGATGTCGCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc < 1:6428046/101‑1 (MQ=16)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 2:3206132/1‑101 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCG.CCGCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 1:6434785/1‑101 (MQ=18)
tcgtGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:1837078/98‑1 (MQ=18)
cttggCCCGAAATTACCCGGGGGGGGGA.AGG.CG.G.AG.CCCAGGGGGGGGCAGCC.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 1:3611082/97‑1 (MQ=255)
cTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCgg < 2:1170636/101‑1 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg < 2:316532/101‑1 (MQ=18)
ttGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg > 1:4032261/1‑101 (MQ=18)
gCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCAGCAC.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCa > 1:5227265/1‑101 (MQ=21)
gCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCa > 1:3185389/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2824829/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 2:5242518/101‑1 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:4732130/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGAGAA.TGG.C..GAAG.CA.AGGGGGGGGCAGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:1136679/101‑1 (MQ=21)
gAAATCGCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 2:2631363/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 2:1978730/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:2673316/1‑101 (MQ=18)
attacccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 2:6304074/97‑1 (MQ=21)
atatCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 1:2414890/101‑1 (MQ=21)
tatCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGa > 2:4738294/1‑101 (MQ=21)
cccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGGCCCGGCGGGCCGTGGCGGCGCGTTGGCGGGCGGGGGGGCGGGCGGTAAccagacg > 2:2270117/1‑96 (MQ=9)
cccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt > 1:1714053/1‑101 (MQ=21)
ccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:1322901/101‑1 (MQ=21)
ccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:3084703/101‑1 (MQ=21)
ccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:6147874/101‑1 (MQ=21)
cGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGCAATTg > 2:5065239/1‑101 (MQ=21)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:3245133/1‑101 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:4044295/1‑101 (MQ=25)
gggggTGAA.TGG.C..GAAGCCAG.AGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:6177567/1‑101 (MQ=25)
gggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAAc < 1:2053421/101‑1 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 2:3840326/101‑1 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:3354257/101‑1 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGCGCCC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa < 1:4227174/101‑1 (MQ=25)
tGAA.TGG.C..GAAG.CCAGAGGGCGGC.AGCG.CC.CCTCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:4654149/101‑1 (MQ=37)
|
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.AG.CAGAAGGGGGGCAAGCG.CC.CC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGA > NC_014034/2493977‑2494152
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|