| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,070 | G→A | 4.7% | intergenic (+118/‑124) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,070 | 0 | G→A | 4.7% | 19.2 ‑0.3 ‑0.0 | 255 | intergenic (+118/‑124) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/6): ref base (140/103): total (146/109) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.67e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.58e-01 | ||||||||||
Only 100 of 279 total aligned reads displayed.
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.AG.CAGAAGGGGGGCAAGC.G.CCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493977‑2494170
|
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 2:5033816/1‑98 (MQ=18)
cGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcg > 2:4103598/1‑98 (MQ=18)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAACATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCagcgc > 1:6144098/1‑97 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAGCCAG.AGGGGGGC.AGC.G.cccc < 2:252539/101‑1 (MQ=17)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc > 2:4049367/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc > 1:7090691/1‑101 (MQ=18)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cc < 2:120243/101‑2 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGG.AGGC.G.cccc.cc > 2:2902251/1‑100 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cc > 1:884095/1‑100 (MQ=17)
cccccGTGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cct < 1:3292237/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cct > 2:843344/1‑99 (MQ=18)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cct < 2:3617111/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cct < 2:3550655/101‑3 (MQ=17)
cccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cca < 2:5732257/101‑3 (MQ=17)
ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cctg < 1:1554710/101‑4 (MQ=17)
ccccGGGATATTGGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGCGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cctg > 1:6308386/1‑98 (MQ=17)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGC.G.CCCC.CTGcccc > 1:6228942/1‑101 (MQ=0)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGcccc < 2:1733916/101‑1 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGC.G.CCCC.CTGCCCcg < 2:6340765/101‑1 (MQ=0)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcg > 1:5969404/1‑101 (MQ=18)
ggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcg < 2:5653150/101‑1 (MQ=17)
ggATATTTGCAGCAAGATGAAACAGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.G.cccc.cctgccacg > 1:3366503/1‑93 (MQ=14)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcgg > 2:31145/1‑101 (MQ=18)
gATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcgg > 2:4306352/1‑101 (MQ=18)
tatTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGC.G.CCCC.CTGCCCcgccg > 2:4669774/1‑101 (MQ=2)
tatTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcgccg > 2:3164905/1‑101 (MQ=17)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGCGGGCAGCC.C.CCCC.CTGCCCcggcgg > 2:6129407/1‑101 (MQ=18)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcggcggg > 1:3783275/1‑100 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCcggcggc > 1:1611925/1‑100 (MQ=17)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGt < 1:6135596/101‑1 (MQ=17)
ttGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGG.CCAA.AG.GCCAAGAGGGGGCAGC.G.CCCC.CTGCCCcgccggat < 2:5078699/101‑3 (MQ=2)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTcc > 1:3578887/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATACCGGGGGGTGAA.TGG.C..GAAGCCAGAGGGGGGACGGGC...CCCC.CGGCCCCGGCGGTcc > 2:4252375/1‑101 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCgg > 1:2661891/1‑100 (MQ=17)
gcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTgg > 1:4493287/1‑101 (MQ=18)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGGCCGGggcggc > 1:3877195/1‑101 (MQ=17)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCACGGCGGTCCGTAGCGgcgc > 2:1810558/1‑101 (MQ=17)
tGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCAGTGGCGgcgc > 2:605370/1‑101 (MQ=17)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGGGGCGGCGcc > 1:2865893/1‑101 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCt > 2:2019594/1‑101 (MQ=18)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGCCCGTCGCGGCGCCt > 2:1856317/1‑101 (MQ=14)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt > 1:2830502/1‑101 (MQ=18)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:5769379/101‑1 (MQ=17)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg > 2:6531082/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATAGCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 2:1348192/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGa > 2:4431943/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc > 1:3521948/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:3499855/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 1:4085201/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGCGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc < 2:3456692/101‑1 (MQ=17)
ggATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcg > 2:3847130/1‑101 (MQ=17)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcg > 2:3785539/1‑101 (MQ=18)
gCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggcg > 2:4196347/1‑101 (MQ=17)
gttCATGTTGCCAGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCgggg < 1:2185098/100‑1 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGCAGCT.C.CCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1009584/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGCCGGGCggggg > 2:109252/1‑101 (MQ=17)
ttCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCggggg < 1:1828257/101‑1 (MQ=18)
ttCATCTTGCCCGAAATATCCCGGGGGGGGAA.GGG.C..GAAG.CCAGAGGGGGGCAGGG.C.CGCC.CTGCCCGGGGGGTCCTGGGGGGAGCCCTGAcgggggggcg > 1:2275570/1‑99 (MQ=2)
tCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGCC..A.AG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgc > 2:2498333/1‑101 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 2:3206132/1‑101 (MQ=18)
cATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGG.AAGC.GCCCCC.CTGCCCCGGCGGCCCGTGGCGGCGCCTTGACGGGCGGGGgcg > 2:4780192/1‑101 (MQ=18)
aTCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGgcgc < 1:4211456/101‑1 (MQ=18)
tCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 2:6181575/101‑1 (MQ=18)
cttggCCCGAAATTACCCGGGGGGGGGA.AGG.CG.G.AG.CCCAGGGGGGGGCAGC.C.CCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGcgcg < 1:3611082/97‑1 (MQ=255)
cTTGCCCGAAATATCCCGGGGGGGGAA.TGG.C..GAAG.CCAAAGGGGGG.AAGCAC.CCCC.CTGCCCCAGTGGTCCGTGGCGGCGCCTTGCCTGGCGGGGGCGGgg > 2:2397589/1‑101 (MQ=16)
ttGCCCGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCggg > 1:4032261/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt > 2:2824829/1‑101 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 1:4137702/101‑1 (MQ=18)
cccGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAt < 2:5242518/101‑1 (MQ=18)
ccGAAATATCCCGGGGGGAGAA.TGG.C..GAAG.CA.AGGGGGGGGCAGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCAtt < 1:1136679/101‑1 (MQ=21)
cGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 1:6480476/101‑1 (MQ=18)
cGAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTa < 1:5881703/101‑1 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa > 2:2468014/1‑101 (MQ=18)
gAAATATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTaa < 2:1978730/101‑1 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGGATTAAc > 1:522527/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAAc > 2:2673316/1‑101 (MQ=18)
aaaTATCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGCGCGGGGGCGCCGGCATTAAc > 1:4250618/1‑101 (MQ=18)
atatCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCg < 1:2414890/101‑1 (MQ=21)
tCCCGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGaaa < 1:5776040/101‑1 (MQ=21)
cccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAt > 1:1714053/1‑101 (MQ=21)
ccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:3084703/101‑1 (MQ=21)
ccGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAAtt < 1:1322901/101‑1 (MQ=21)
cGGGGGGTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTg < 1:6586212/101‑1 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCGGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:319282/1‑101 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc < 1:6432116/101‑1 (MQ=25)
ggggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGc > 1:4044295/1‑101 (MQ=25)
gggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGGGCGGGCATTAACCggagttccg > 2:2270481/1‑93 (MQ=18)
gggggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCa > 2:5922178/1‑101 (MQ=25)
ggTGAA.TGG.C..GAAG.CCAGAGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACa > 2:5429476/1‑101 (MQ=25)
tGAA.TGG.C..GAAG.CCAGAGGGCGGC.AGC.G.CCCCTCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGa < 1:4654149/101‑1 (MQ=37)
gcgaagccagaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGAtgctgc < 1:4448537/91‑1 (MQ=38)
gcgaagccagaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGAtgctgc < 1:5420571/91‑1 (MQ=38)
cgaagccagaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCg > 2:2063904/10‑101 (MQ=38)
agccagaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATc > 2:7098330/7‑101 (MQ=38)
ccagaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt > 1:5276686/5‑101 (MQ=38)
ccagaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCt > 1:4831207/5‑101 (MQ=38)
agaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg < 1:6713138/99‑1 (MQ=39)
agaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCg > 1:6072482/3‑101 (MQ=39)
gaGGGGGGC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGc > 1:341810/2‑101 (MQ=39)
ggggggC.AGC.GCCCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGccc > 1:6847692/1‑101 (MQ=255)
|
AAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGG.C..G.AG.CAGAAGGGGGGCAAGC.G.CCCC.CTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGGGGGCGCGGGCATTAACCGAAATTGCAACAGATGCTGCGATCCTCGCCCA > NC_014034/2493977‑2494170
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|