Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_014034 2,747,854 C→G 100% intergenic (‑186/+107) RCAP_rcc02553 ← / ← RCAP_rcc02554 hypothetical protein/NmrA family protein

Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140342,747,8540C→G100.0% 152.0 52intergenic (‑186/+107)RCAP_rcc02553/RCAP_rcc02554hypothetical protein/NmrA family protein
Reads supporting (aligned to +/- strand):  new base (17/34):  ref base (0/0):  total (17/35)

AATAGGAAACGCGACCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGG  >  NC_014034/2747759‑2747949
                                                                                                |                                                                                                 
aaggggAACCGCGCCCCGCGTTGCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgag                                                                                               <  1:3161895/97‑1 (MQ=25)
aaTGGGAACCGCCCCCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgag                                                                                               <  1:6045925/101‑1 (MQ=25)
aaTAGGAACCGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgag                                                                                               <  1:3692838/101‑1 (MQ=37)
aaTAGGAACCGCGACCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgag                                                                                               <  2:4453868/101‑1 (MQ=37)
aaTAGAAACCGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgag                                                                                               <  1:13313/101‑1 (MQ=25)
 aTAGGACACGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgaga                                                                                              <  1:4871919/101‑1 (MQ=37)
 aTAGGAACCGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCgaga                                                                                              <  2:4378050/101‑1 (MQ=37)
  tAGGAACCGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGaa                                                                                             <  1:4294205/101‑1 (MQ=37)
  tAGGAACCGCGACCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGaa                                                                                             <  2:5592964/101‑1 (MQ=37)
  aaGGAAACGCCCCCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGaa                                                                                             <  2:7014257/100‑1 (MQ=37)
   agtaagcgcgCCCCTCGTCTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAg                                                                                            <  1:6597892/95‑1 (MQ=25)
   aGGAAACGCGCCCCGCGTTGCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAg                                                                                            <  2:6869036/101‑1 (MQ=37)
    ggAACCGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAgc                                                                                           <  1:2778250/101‑1 (MQ=25)
    ggAAACGCGGCCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAgc                                                                                           <  1:3169872/101‑1 (MQ=37)
    ggAAACGCGCCCCGCTTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAgc                                                                                           <  1:1265745/101‑1 (MQ=25)
    ggAAACGCGCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAgc                                                                                           <  2:3232245/101‑1 (MQ=37)
     gAAACGCGACCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAgcc                                                                                          >  2:5618293/1‑100 (MQ=255)
       accgcgCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGcgcc                                                                                        <  2:6453239/99‑1 (MQ=25)
       accgcgCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGcgcc                                                                                        <  2:5118470/99‑1 (MQ=25)
        aCGGGACCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGcgccc                                                                                       <  2:6831639/101‑1 (MQ=25)
        aCGCGACCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGcgccc                                                                                       <  2:2901215/101‑1 (MQ=25)
         cgcgCCCCGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGcgcccg                                                                                      <  1:5611129/101‑1 (MQ=25)
           cgccccCCGTCTCCCCGCCCCCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGTCGAGAAGcgcccgcc                                                                                    <  1:5618583/98‑1 (MQ=21)
            gACCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCccgcc.g                                                                                  >  1:5354158/1‑101 (MQ=255)
            cccccGCTTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCccgcc.g                                                                                  <  1:4853413/99‑1 (MQ=25)
            cccccGCGTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCccgcc.g                                                                                  <  1:4452096/99‑1 (MQ=25)
             ccccctttttCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gg                                                                                 <  2:401784/94‑1 (MQ=25)
             ccccGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gg                                                                                 <  1:6301453/100‑1 (MQ=255)
              cccccttccccccGCCCGCAGCGCCCGTTTGCGGCATGCCCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.ggg                                                                                <  1:650591/92‑2 (MQ=21)
              cccGCGTTCCCCCGCCCGCGGCCCCCGGTGGCGGCATGCCCGCTTCAGCCCGCACCACAGGGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.ggg                                                                                <  2:5353886/101‑2 (MQ=21)
                cccgtccccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggcc                                                                              <  1:5862280/94‑4 (MQ=21)
                 ggttcgccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                             <  2:5536887/95‑5 (MQ=21)
                 gggtccccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCCCCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                             <  1:1130576/95‑5 (MQ=21)
                 gcttccccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                             <  1:5763948/95‑5 (MQ=21)
                 cgcctgccccGCCCGCGGCGCCCGGTTGCGTCATGACCGTTTCAGCCCGCACAACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccg                                                                             <  2:3361139/95‑5 (MQ=17)
                  ggTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccgg                                                                            <  1:1011417/100‑6 (MQ=21)
                  cgTTCCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccgg                                                                            <  1:3454380/101‑6 (MQ=25)
                    tccccccGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCgcc.gggccgggc                                                                          <  1:76691/98‑8 (MQ=21)
                                                   gACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCGCCGGGCCGGGGGGTGGCCGAGGGCCCTTGGGCCCCTCggggt                                            >  2:3280255/1‑100 (MQ=17)
                                                   gACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGt                                           >  2:3177167/1‑101 (MQ=17)
                                                                       caGAGGGCAGCGCCCGGCCCGGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCa                       >  2:4313916/1‑101 (MQ=17)
                                                                                  gcccggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGGCACAGGACCTCTGTGAAGCCTGGCCAAGGCg            >  1:613325/1‑101 (MQ=17)
                                                                                   cccggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGa           >  1:4768487/1‑101 (MQ=18)
                                                                                    ctgccccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGAt          >  2:3850297/9‑101 (MQ=18)
                                                                                     cggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg         >  1:6657914/1‑101 (MQ=18)
                                                                                     cggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg         >  2:2722409/1‑101 (MQ=18)
                                                                                     cggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATg         >  1:4581203/1‑101 (MQ=18)
                                                                                      ggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg        >  2:2062315/1‑101 (MQ=18)
                                                                                      ggcccgGCGGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATgg        >  2:757934/1‑101 (MQ=18)
                                                                                      gacccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGCCTCAGGACCCCTGTGACGCATGGCCAAGGGGATgg        >  2:2899044/7‑101 (MQ=18)
                                                                                       gcccggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGc       >  1:5403698/6‑101 (MQ=18)
                                                                                          cggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCtt    >  2:732402/3‑101 (MQ=21)
                                                                                           ggcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTg   >  1:2804317/2‑101 (MQ=21)
                                                                                            gcgGGCGAGAAGCGCCCGCCGGGCCGGGCGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTgg  >  1:1332634/1‑101 (MQ=21)
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AATAGGAAACGCGACCCGCGTTTCCCCGCCCGCAGCGCCCGGTTGCGGCATGACCGCTTCAGCCCGCACCACAGAGGGCAGCGCCCGGCCC.GCGGCCGAGAAGCGCCCGCC.GGCCGGCTGCTGCCCGAGGGCCTTTGGG.CCCTCGGGGGTCACAGGACCTCTGTGACGCATGGCCAAGGCGATGGCCTTGG  >  NC_014034/2747759‑2747949

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG