| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,494,022 | Δ1 bp | 3.4% | intergenic (+70/‑172) | RCAP_rcc02319 → / → RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,494,022 | 0 | C→. | 3.4% | 24.2 ‑0.3 ‑0.7 | 326 | intergenic (+70/‑172) | RCAP_rcc02319/RCAP_rcc02320 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/5): ref base (154/160): total (161/165) | ||||||||||
| Fisher's exact test strand distribution p-value = 7.68e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.09e-01 | ||||||||||
Only 100 of 348 total aligned reads displayed.
GGCGGGCGCGCGGCACGACAGGCCGAGTAA.GGGGGGG.CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGG > NC_014034/2493923‑2494121
|
ggcgggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGGGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGc > 1:5295295/1‑101 (MQ=21)
ggcgggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGc > 1:4163004/1‑101 (MQ=21)
ggcgggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGc < 2:3732290/101‑1 (MQ=21)
gggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCtt < 2:4257301/101‑1 (MQ=21)
ggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCttt < 2:2465632/101‑1 (MQ=21)
ggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCttt < 1:7834567/101‑1 (MQ=21)
ggcgCGCGGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCttt < 2:92579/101‑1 (MQ=21)
cgcgcgGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGCTATTTGCAGCAAGATGAAACCGGATGCCTTTCa < 1:6468131/101‑1 (MQ=21)
gcgGCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCt < 2:1118283/101‑1 (MQ=21)
ggCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTg < 2:5643495/101‑1 (MQ=21)
ggCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTg < 1:4194395/101‑1 (MQ=21)
ggCACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCCTTCATTTTg > 1:5643702/1‑101 (MQ=18)
cACGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGcc < 2:5947047/101‑1 (MQ=21)
aCGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCCTCTTGccc > 2:1895580/1‑101 (MQ=18)
aCGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGccc < 2:2770154/101‑1 (MQ=21)
cGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg < 1:6124724/101‑1 (MQ=21)
cGACAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCg > 1:5141554/1‑101 (MQ=21)
aCAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaa < 2:379302/101‑1 (MQ=21)
aCAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaa < 1:8498056/101‑1 (MQ=21)
aCAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaa < 1:3255690/101‑1 (MQ=21)
aCAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaa > 2:6218555/1‑101 (MQ=21)
cAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaaa < 1:8146757/101‑1 (MQ=21)
cAGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTACCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaaa < 2:5231288/101‑1 (MQ=21)
cAGGCCGAGTAA.GGGGGGGTCGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGaaa < 1:3587970/101‑1 (MQ=21)
aGGCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCCCAAGCGGACTCCCCCCGCGATATTTTCAGGAAGATGAAACCGGATGCCTTTCATATTGCCCGACat > 2:8955022/1‑101 (MQ=18)
ggCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata > 2:7981973/1‑101 (MQ=21)
ggCCGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAata < 2:6865874/101‑1 (MQ=21)
ccGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGCACTCCCCCCGGGATATTTGCAGCACGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATc < 1:6568343/101‑1 (MQ=21)
cgagtaggggggggg.CGCTGCCCCCCGTCCGCAAGCGGTCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc < 2:4334386/93‑1 (MQ=18)
cGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc < 1:6324418/101‑1 (MQ=21)
cGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc < 2:812952/101‑1 (MQ=21)
cGAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGCGATATTTGCAGCCAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATcc > 1:1916425/1‑101 (MQ=18)
gAGTAAGGGGGGGG.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATccc < 1:966386/101‑1 (MQ=18)
taagggggggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg > 2:7402294/5‑101 (MQ=255)
taagggggggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCggg < 1:1707389/97‑1 (MQ=255)
aagggggggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCgggg < 1:3192936/98‑1 (MQ=255)
aagggggggc.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCcggg < 1:8801286/98‑1 (MQ=18)
tcttccgatccgcTGCCCCCGGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCcggg < 1:7232375/91‑1 (MQ=21)
gggggggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGAGGAAACCGGATGCCTTTCATCTTGCCCGAAATATCACggcggg > 1:8301384/2‑101 (MQ=18)
ggggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa < 2:6127768/101‑1 (MQ=255)
ggggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGa < 1:1052772/101‑1 (MQ=255)
ggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 1:99830/101‑1 (MQ=255)
ggg.CGCTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.t < 2:7193470/101‑1 (MQ=255)
cgcTGCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGc > 1:734792/1‑101 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag > 1:5765528/1‑99 (MQ=255)
gCCCCCCGTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aag > 1:4600842/1‑99 (MQ=255)
cccccG.TCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagcc < 1:9107171/101‑5 (MQ=255)
cccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccag < 2:3582138/97‑7 (MQ=255)
ccgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccaga < 2:2574335/98‑8 (MQ=255)
cgtCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGCATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.aagccagag < 1:8955443/99‑9 (MQ=21)
ggACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCagcgc > 2:7463652/1‑97 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAGAGGGGGGGcgcgcc > 2:5435998/1‑96 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.c > 2:3447109/1‑101 (MQ=18)
gACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGG.AAGCG.c.c > 2:264577/1‑101 (MQ=18)
aCTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.cc > 1:489283/1‑101 (MQ=18)
cTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAGCCAG.AGGGGGGC.AGCG.c.ccc < 2:882595/101‑1 (MQ=17)
ccccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.ccccc > 2:5039857/1‑100 (MQ=18)
ccccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.ccccccg > 1:6917471/1‑98 (MQ=17)
cccGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.c.ccccctgc < 2:7704352/101‑5 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGccc > 2:4432444/1‑101 (MQ=17)
cGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGccc < 2:1626352/101‑1 (MQ=17)
gggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCCTGcccc > 1:4013546/1‑101 (MQ=0)
gggATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGcccc < 2:2158618/101‑1 (MQ=17)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcg > 1:2146677/1‑101 (MQ=2)
ggATATTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcg > 1:1831706/1‑101 (MQ=2)
atTTGCGGCAAGATGAAGGGGCATG.ATTTCATCTTGCCCGAAATATCCC.AGGGGTGAATTGGCCAA.AG.GCCAAGAGGGGGCAGCG.C.CCCCTGCCCcgccgg < 1:7555424/101‑1 (MQ=2)
atTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCcggcgg > 2:3274308/1‑101 (MQ=18)
tttGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGt > 2:3144781/1‑101 (MQ=18)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.CGCGCC.CCCCTGCCCcggcggccg > 2:3906303/1‑98 (MQ=17)
tGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTcc < 2:6445306/101‑1 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCg > 2:664137/1‑101 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCg < 1:700798/101‑1 (MQ=17)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCg > 2:4482595/1‑101 (MQ=18)
gcagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGGCCg > 2:6821784/1‑101 (MQ=17)
cagcaAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGt < 1:3359253/101‑1 (MQ=17)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggc > 1:132532/1‑101 (MQ=18)
caAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggc > 1:2412558/1‑101 (MQ=18)
aataTGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggcg > 1:2602822/4‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggcgg > 1:6193330/1‑101 (MQ=17)
aGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggcgg > 2:3636282/1‑101 (MQ=18)
gATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTggcggc > 2:7092140/1‑101 (MQ=18)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGCAGCTC.C.CCCCTGCCCCGGCGGTACGTGgccgcggc > 2:1494372/1‑99 (MQ=14)
gAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGcc > 2:1991524/1‑101 (MQ=18)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:1258087/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCt < 2:2828971/101‑1 (MQ=17)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGCAGCCC.C.CCCCTGCCCCGCCGGCCGGTGGGGGCGCCt > 1:1127422/1‑101 (MQ=12)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCGGCCCCGGCGGGCCGTGGCGGCGCCt > 1:1184577/1‑101 (MQ=14)
aaaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGGGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCG.CGCCCCTGCCCCGCCGGTCCGCGGGGGCCccc > 1:290759/1‑100 (MQ=9)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCtt < 2:5378781/101‑1 (MQ=17)
aaCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCtt > 2:766081/1‑101 (MQ=18)
aCCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTg < 1:7982313/101‑1 (MQ=17)
ccGGATGCCTTTCATCTTGCCCGAAATGTCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGa < 1:382543/101‑1 (MQ=17)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc > 2:2872290/1‑101 (MQ=18)
cGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGAC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAc > 2:4739024/1‑101 (MQ=18)
gATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CGAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg > 1:7691488/1‑101 (MQ=18)
gATGCCTTTCATCTGACCCGAAATATCCCGGGGGGTGAA.CGGCA.A.AG.CCAGAGGGGGGCAACGC.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgg < 2:4675163/101‑1 (MQ=18)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg > 2:1057911/1‑101 (MQ=18)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg < 2:4910541/101‑1 (MQ=17)
aTGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcggg > 1:8056151/1‑101 (MQ=17)
tGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGGA.TGGC..GAAG.CCAGAGGGGGGC.AGCGCC.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGAcgggc < 2:847206/101‑1 (MQ=17)
|
GGCGGGCGCGCGGCACGACAGGCCGAGTAA.GGGGGGG.CGCTGCCCCCGTTCCGCAAGCGGACTCCCCCCGGGATATTTGCAGCAAGATGAAACCGGATGCCTTTCATCTTGCCCGAAATATCCCGGGGGGTGAA.TGGC..G.AG.CAGAAGGGGGGCAAGCG.C.CCCCTGCCCCGGCGGTCCGTGGCGGCGCCTTGACGGGCGG > NC_014034/2493923‑2494121
Base quality scores:
ATCG
< 3 ≤
ATCG
< 17 ≤
ATCG
< 25 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|