| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,640,149 | Δ1 bp | 1.1% | intergenic (‑125/+151) | thrS ← / ← RCAP_rcc02462 | threonyl‑tRNA synthetase/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,640,149 | 0 | C→. | 1.1% | 2.7 ‑0.5 ‑0.0 | 379 | intergenic (‑125/+151) | thrS/RCAP_rcc02462 | threonyl‑tRNA synthetase/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (0/4): ref base (105/268): total (107/272) | ||||||||||
| Fisher's exact test strand distribution p-value = 5.80e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.36e-01 | ||||||||||
Only 100 of 442 total aligned reads displayed.
CTACAAAGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGG.CTTCGGCCAATTCGCCCCCCGAGGTATTTGGAACAAGATGAAAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCTGA > NC_014034/2640049‑2640249
|
tACAAAGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.cc < 2:5671268/101‑1 (MQ=255)
tACAAAGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.cc > 1:2602012/1‑101 (MQ=255)
aCAAAGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAAGGGGGGGCGG.cgc > 1:4043569/1‑99 (MQ=255)
cAAAGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.cccc > 1:1043422/1‑101 (MQ=255)
aaGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.cccccc < 2:1167668/101‑1 (MQ=255)
aGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCct < 2:4797741/101‑1 (MQ=255)
gcgcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGCCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCctc < 2:4463792/101‑1 (MQ=255)
gcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGGGCTG.cccccccgtt > 2:2049367/1‑97 (MQ=255)
gcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.tt < 2:5226121/101‑1 (MQ=255)
gcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.tt < 1:2345415/101‑1 (MQ=255)
gcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.tt < 1:7491114/101‑1 (MQ=255)
gcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.tt < 1:5329755/101‑1 (MQ=255)
gcCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAAGGGGGGGCGG.gcccccccct > 2:4584069/1‑97 (MQ=255)
cccGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTg < 2:8973214/101‑1 (MQ=255)
cccGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTg < 2:795459/101‑1 (MQ=255)
cGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGG.c < 1:5233721/101‑1 (MQ=255)
ggTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGGGCAGGC.AAAAGGGGGGGGCTG.CCCCCCCC.TTCG.cc > 1:4343990/1‑100 (MQ=255)
gTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGG.cct > 2:8871341/1‑99 (MQ=255)
tGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGG.ccttc < 1:8883776/101‑5 (MQ=255)
gCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGG.ccttcg < 2:8647203/101‑6 (MQ=255)
ggTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGGGCCG.CCCCCCCC.CTGG.ccttccggc > 1:7561282/1‑93 (MQ=255)
gTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCa < 2:3403341/101‑1 (MQ=255)
gTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCa < 2:2322667/101‑1 (MQ=255)
tATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAAt < 1:9105103/101‑1 (MQ=255)
tATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAAt < 1:7037882/101‑1 (MQ=255)
atgatgCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGGGCTG.CCCCCCTC.TTGGCCTTCGGCCTAtt > 1:3105454/1‑101 (MQ=38)
tgatgCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTc < 2:8719731/101‑1 (MQ=255)
gatgCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGGTG.GCCCCCTC.TTGGCCTTCGGCCAAttta > 1:7326520/1‑99 (MQ=38)
atgCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCTCTG.CCCCCCTC.TTGGCCTTCGGCCAATTcac < 2:6169001/101‑3 (MQ=255)
gcgcCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCAccc < 1:8741726/101‑1 (MQ=255)
gcCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCAccccc < 1:1837523/101‑1 (MQ=255)
gcCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGCGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCAccccc < 1:7915626/101‑1 (MQ=37)
ccGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCGcccccc < 1:9055418/101‑1 (MQ=255)
cGGGTATGCGCCCCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCg < 2:2434124/101‑1 (MQ=25)
ggTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGCAAAAAGGGGGGGGCGGCCCCCCCCC.TTCG.CCTCGGCCACTTACcccccccc > 1:3424303/1‑99 (MQ=255)
ggTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGGGCTG.CCCCCCTC.TCGGCCTTCGGCCAATTCCCCCCCCgcg > 1:4507798/1‑99 (MQ=255)
tATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCACCGAGGt < 1:3771759/101‑1 (MQ=37)
gaTGCGACGCCGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGt < 1:6367536/100‑1 (MQ=37)
aTGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTa < 1:4662937/101‑1 (MQ=255)
aTGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTa < 1:6192779/101‑1 (MQ=255)
tGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTAt < 1:396431/101‑1 (MQ=255)
gCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTAtt < 1:4738093/101‑1 (MQ=255)
cGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTAttt < 2:3735096/101‑1 (MQ=255)
cGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTAttt < 1:5538345/101‑1 (MQ=255)
cGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTAttt < 2:8389229/101‑1 (MQ=255)
cGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAAATCACCCCCCGAGGTAttt > 2:6302800/1‑101 (MQ=25)
gACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTg < 2:5414428/101‑1 (MQ=255)
gACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTg < 1:7135542/101‑1 (MQ=255)
cgcgGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGa < 2:7305277/101‑1 (MQ=255)
gcggcgGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATNTGGag > 1:2783970/1‑100 (MQ=255)
cggcggCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGagc < 1:7801743/101‑3 (MQ=255)
cggcggCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGagc < 1:3020865/101‑3 (MQ=255)
gcggcAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCaa < 2:2789072/101‑1 (MQ=37)
cggcAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAg < 1:215044/101‑1 (MQ=37)
cggcAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGA.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAg < 2:6602884/101‑1 (MQ=25)
aGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATGa < 2:529478/101‑1 (MQ=37)
cGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATGaacg > 2:1671333/1‑99 (MQ=25)
gtgtCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATGaaaga < 1:801475/101‑3 (MQ=25)
tgtCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATGaaagac < 2:7704924/101‑4 (MQ=25)
cAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGGGCTG.GCCCCCTCTTTGC.CTTCGGCCAAGTCACCCCCCCAGGGATTTTGAGGCAGATTAAAA.ACCAt > 1:6555930/1‑101 (MQ=255)
aaCCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATg < 1:1553225/101‑1 (MQ=25)
aCCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCCCCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATg..g < 2:749244/101‑1 (MQ=25)
aCCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATg..g < 2:8268564/101‑1 (MQ=25)
aCCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATg..g < 2:189009/101‑1 (MQ=25)
ccGTGGCGCTTTTGCGCAGGC.AAAACGGGGGCGCTG.CCCCCCTC.TTGGCCCTCCGCCAATTCACCCCCCCAGGCATTTGGAGCAAGATG.AAAGAGCATg..gg > 2:3852988/1‑101 (MQ=21)
gccgcTTTGCCGCCGGC.AAGGAGGGGCCGCGC.CGCCCCTC.TTGGCCTTCGCCCAATTCCCCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCa < 1:4243960/99‑1 (MQ=16)
gcgcTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCAt < 2:789557/101‑1 (MQ=25)
cTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCtt < 1:8549792/101‑1 (MQ=21)
tttGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGc < 2:7390367/101‑1 (MQ=25)
tttGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGc < 2:5784892/101‑1 (MQ=25)
ttGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGcc < 2:6732890/101‑1 (MQ=25)
ttGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGcc < 2:4710028/101‑1 (MQ=25)
cAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCaaa < 2:3178298/101‑1 (MQ=25)
cccctaaaAGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAata < 2:2124653/96‑1 (MQ=17)
gC.AAAAGGGGGGCCCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAatat < 1:3327943/101‑1 (MQ=21)
cccgaaaAGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAatat > 2:2694194/5‑101 (MQ=17)
c.AAAAGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATc < 2:8102212/101‑1 (MQ=21)
aaaGGGGGGCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATccc < 1:6121047/101‑1 (MQ=21)
aaaGGGGGGCGCTG.CCACCCTC.TTGGCCTTCGGACAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATccc < 2:6958684/101‑1 (MQ=25)
aaagggggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgg > 1:1414557/4‑101 (MQ=17)
aaagggggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgg < 1:8172126/98‑1 (MQ=17)
agggggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggg > 1:99828/2‑101 (MQ=18)
agggggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggg > 2:1322702/2‑101 (MQ=18)
ggggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggggg > 1:2741492/1‑101 (MQ=18)
ggggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCggggg > 2:4307349/1‑101 (MQ=25)
ggggCGCTG..CCCCCTC.TTGGCCTTTGGCCAATTC.ACCCCTGGGATATTTCGGGCAAGATGAA...ATCATGCCCCTTCATCTTGCCGCAAATATCCCGGGGGGa < 2:3525400/101‑1 (MQ=2)
gggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggggtg < 1:5077480/101‑3 (MQ=18)
ggCGCTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggggtga > 1:6834317/1‑98 (MQ=21)
gcgcTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggggtgag < 1:4542479/101‑5 (MQ=21)
gcgcTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGA..TGG..GGTTTATCTTGCCCCAAATATCCCgggggtgag < 1:3905923/101‑5 (MQ=21)
cgcTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGGATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGGGt > 1:5667808/1‑101 (MQ=25)
gcTG.CCCCCCTC.TTGGCCTTCGGGCCAATCAACCCCCCCGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTTCTCTTCGCTCAAACATTCCGGGGGGAggc > 2:3021254/1‑99 (MQ=9)
gcTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGGGATATTTGCGGCAAGGTGAAAGGATGA....GGTTTATCTTGCCCCAAATATCCCgggggtgaggc < 2:3269523/101‑7 (MQ=21)
gcTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTc > 2:4100169/1‑101 (MQ=25)
cTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTcc > 1:1119187/1‑101 (MQ=25)
cTG.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTcc > 2:647789/1‑101 (MQ=25)
cTG.CCCCCCTC.CTGGCCTTCGGCCAATTCCCCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTcc < 1:5774876/101‑1 (MQ=25)
g.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCTg < 1:1261088/101‑1 (MQ=37)
g.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCTg < 2:550863/101‑1 (MQ=37)
g.CCCCCCTC.TTGGCCTTCGGCCAATTCACCCCCCGAGGTATTTGGAGCAAGATG.AAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCTg < 1:3640360/101‑1 (MQ=25)
|
CTACAAAGCGCCCGGTTGCGGGTTATGATGCGCCGGGTATGCGACGCGGCGGCAGGCGTGTCAACCGTGGCGCTTTTGCGCAGGC.AAAAGGGGGGCGCTG.CCCCCCTC.TTGG.CTTCGGCCAATTCGCCCCCCGAGGTATTTGGAACAAGATGAAAAGACCATG..GGTTCATCTTGCCTCAAATATCCCGGGGGGAGTCCTGA > NC_014034/2640049‑2640249
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|