| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,640,005 | +GGCA | 100% | intergenic (+85/‑60) | mccB → / → mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,640,005 | 1 | .→G | 100.0% | 28.4 | 210 | intergenic (+85/‑60) | mccB/mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Reads supporting (aligned to +/- strand): new base (193/4): ref base (2/11): total (195/15) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.53e-13 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.25e-06 | ||||||||||
| * | NC_014034 | 1,640,005 | 2 | .→G | 100.0% | 28.4 | 210 | intergenic (+85/‑60) | mccB/mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Reads supporting (aligned to +/- strand): new base (193/4): ref base (2/11): total (195/15) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.53e-13 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 3.09e-05 | ||||||||||
| * | NC_014034 | 1,640,005 | 3 | .→C | 100.0% | 27.0 | 210 | intergenic (+85/‑60) | mccB/mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Reads supporting (aligned to +/- strand): new base (193/3): ref base (2/11): total (195/15) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.33e-14 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.02e-04 | ||||||||||
| * | NC_014034 | 1,640,005 | 4 | .→A | 100.0% | 29.7 | 210 | intergenic (+85/‑60) | mccB/mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Reads supporting (aligned to +/- strand): new base (192/3): ref base (2/11): total (195/15) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.57e-14 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.97e-05 | ||||||||||
Only 100 of 278 total aligned reads displayed.
GATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....G....G.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC > NC_014034/1639905‑1640088
||||
aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGGAAGATGAAACCCATCCCTTTCATCTTGCCCCCAATAT.TCCGGGGGGGC.C..ggg.....g....g > 2:3783613/1‑101 (MQ=37)
aTCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGCAAGATGAAAACCAACCCCTTCATCCTTTCCCCAATAT.TCCCGCGGGCC.C..gcg.....g....g > 2:3101114/1‑101 (MQ=19)
aTCTTCCGGATGTGACTGTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..ggg.....g....g < 2:5233429/101‑1 (MQ=255)
tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTTCCCCCAAAAT.CCCGGGGGGCC.C..cgg.....g....gg > 1:4270334/1‑100 (MQ=37)
cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGGAAGATGAAAACCATCCCTTTCATCTTGCCCCCAATAT.CCCGGGGGGCC.C..ggg.....g....ggg > 1:5488062/1‑99 (MQ=37)
cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGGAAGATGAAACCCCACCCTTTTATCTTTCCCCCAATATCCCCGGGGGGCC.C..ggg.....g....gg > 1:2182300/1‑100 (MQ=25)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGCAAGATGAAACCCATCCCCTTCATCTTGCCCCAAATAT.CCCCGGGGGCC.C..ggg.....g....ggcg > 2:2095185/1‑98 (MQ=37)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTTGGGCAAGATGAAAACCATCCCTTTCATCTTGCCCCAAATAT.CCCCGGGGGCC.C..ggg.....g....ggcg > 2:2480387/1‑98 (MQ=37)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..ggg.....g....ggca < 1:4953619/101‑4 (MQ=255)
tCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGGAAGAAGAAAACCAACCCCTTCATCTTTCCCCCAATAT.CCCCGGGGGCC.C..ggg.....g....ggggg > 1:171706/1‑97 (MQ=255)
ccGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGCAAGATGAAACCCAACCCTTTCATCTTGCCCCAAATAT.ACCGGGGGGGC.C..ggg.....g....gggagc > 1:785194/1‑96 (MQ=25)
ccGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..ggg.....g....ggcagc < 1:7346647/101‑6 (MQ=255)
ccGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..ggg.....g....ggaagc < 2:1522942/101‑6 (MQ=255)
ggATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGCAAGATGAAACCCATCCCCTTCATCTTTCCCCCAATAT.CCCGGGGGGCC.C..ggg.....g....ggcagcgc > 1:8627627/1‑94 (MQ=37)
ggATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAAAAT.CCCCGGGGGCC.C..ggg.....g....gggagcgc > 1:8913698/1‑94 (MQ=37)
gATGTGACTTTCGATGCCTCCGGCGGGGGGATTTGGGGGAAGATGAAAACCCTCCCCTTTTTGTTGCCCCCAAAAT.CCCGGGGGGCC.C..GGG.....G....g.....gg.....cgcgcc > 1:7805374/1‑96 (MQ=255)
gATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAAACCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..cgg.....g....ggccgcgcc > 2:2312475/1‑93 (MQ=25)
tgtgACTTTCGATGCCTCCGGCGGGGATATTTGGGGGAAGATGAAAACCACCCCCTTCATCTTTCCCCCAATGA.CCCCGGGGGCC.C..ggg.....g....ggcggggcccc > 1:6393049/1‑91 (MQ=21)
tgtgACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..ggg.....g....ggcggcgcccc > 1:3530315/1‑91 (MQ=255)
gATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTc > 2:5598448/1‑101 (MQ=21)
ccTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGcc > 2:6933723/1‑101 (MQ=21)
cccGGGGGGGATTTTGGGGGAAAGATAACCCCCCTCCTTTCCCTTTTCCCCCAAATAC.CCGGGGGGGCC.G..GGG.....G....GGC...CGCC...CCCCCCGCCACTTCCGCCAc < 1:6695880/100‑1 (MQ=255)
ggggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCa > 1:7376357/1‑101 (MQ=25)
gggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAg > 1:4630448/1‑101 (MQ=25)
gggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAg > 2:7546195/1‑101 (MQ=25)
gggATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAg > 1:2845196/1‑101 (MQ=25)
gATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAgcg > 2:9027941/1‑101 (MQ=25)
gATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAgcg > 1:2045590/1‑101 (MQ=25)
tatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcc > 1:2818032/1‑101 (MQ=25)
tatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcc > 2:1539840/1‑101 (MQ=25)
tatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcc > 2:8357898/1‑101 (MQ=25)
tatTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcc > 1:6583268/1‑101 (MQ=25)
atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGccc > 2:4749591/1‑101 (MQ=25)
atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGccc > 1:4426544/1‑101 (MQ=25)
atTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGccc > 1:1321019/1‑101 (MQ=25)
tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCCG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 2:6501449/1‑101 (MQ=25)
tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 2:737196/1‑101 (MQ=25)
tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 1:7554290/1‑101 (MQ=25)
tttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 1:5126663/1‑101 (MQ=21)
ttGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg > 1:1818481/1‑101 (MQ=25)
tgggggCAAGAAAACCCCCCCCCCTTCCTTC.TGCCCCAAAATC.CCCGGGGGGCC.C..GGGGGGGAG....G.....CC.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg < 2:1026050/99‑1 (MQ=255)
tGGTGCAAGAAGAACCCTCCCCCTTCCATTTTGCCCGAAATGG.CCGGGGGGCCCGG..GGG.....G....G.....CGGCC..CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg < 2:5848275/101‑1 (MQ=255)
tGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg > 1:1424344/1‑101 (MQ=25)
tGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg > 2:4199029/1‑101 (MQ=25)
tGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg > 1:6830093/1‑101 (MQ=25)
ggggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGc > 2:7249915/1‑101 (MQ=25)
gggCAAGATGAACCCCACCCCTTTCACCTCGCCCAAAATA..CCGGGGGGGCC.C..GGG.....G....GGGCCCCC.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc < 2:3893476/101‑1 (MQ=255)
ggCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCg > 2:5722386/1‑101 (MQ=21)
cAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 2:3299270/1‑101 (MQ=25)
cAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 1:4005176/1‑101 (MQ=25)
aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 2:3591808/1‑101 (MQ=25)
aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 1:3865379/1‑101 (MQ=25)
aaGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 2:6226060/1‑101 (MQ=25)
aTGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg > 2:4622447/1‑101 (MQ=25)
tGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGGAGCGCCCCGGCCGTTGACGa > 1:8825001/1‑101 (MQ=21)
tGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa > 2:4666865/1‑101 (MQ=25)
gaccccccccccTTTC.TCCTGCCCCAAAATC.CCCGGGGGGGC.CGGGGG.....G....G.....CGCCC..CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa < 1:2312542/92‑1 (MQ=255)
gAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa > 1:8167961/1‑101 (MQ=25)
gAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa > 1:1135490/1‑101 (MQ=25)
caccccccccccTTCCATC.TCCCCCAAAAGC.CCCGGGGGGCC.CGGGGG.....G....G.....CGCCC..CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa < 1:7500235/92‑1 (MQ=255)
aaaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg > 2:2558581/1‑101 (MQ=25)
aaCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg > 2:8229702/1‑101 (MQ=25)
aCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACNANGga > 1:4148239/1‑101 (MQ=21)
aCCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGga > 2:6341714/1‑101 (MQ=25)
cccctctttttCATCGCGCCCAAAAT.C.CCGGGGGGGCC.C..GGG.....G....G.....CGCCCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag < 1:2988276/93‑1 (MQ=255)
cccATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag > 1:5736475/1‑101 (MQ=25)
ccATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgaga > 2:3410930/1‑101 (MQ=25)
cATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc > 1:4839656/1‑101 (MQ=25)
aTCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc > 2:8063806/1‑101 (MQ=21)
tCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGCGACcg > 2:2965927/1‑101 (MQ=21)
tCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg > 2:6095916/1‑101 (MQ=25)
cTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa > 2:4340268/1‑101 (MQ=25)
tttCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt > 2:787272/1‑101 (MQ=25)
ttCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:8325347/1‑101 (MQ=25)
ttCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:5951726/1‑101 (MQ=25)
ttCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:1038152/1‑101 (MQ=25)
ttCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:8543598/1‑101 (MQ=25)
tCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt > 1:62383/1‑101 (MQ=25)
tCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt > 1:8257205/1‑101 (MQ=25)
tCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt > 2:1396115/1‑101 (MQ=25)
cATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 2:7280503/1‑101 (MQ=25)
aTCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGttt > 2:368406/1‑101 (MQ=25)
cTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa > 1:9110226/1‑101 (MQ=25)
cTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCa > 1:726590/1‑101 (MQ=25)
ttGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa > 1:3581661/1‑101 (MQ=25)
ttGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa > 2:6608474/1‑101 (MQ=25)
gCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCacaa > 2:673525/1‑101 (MQ=25)
gCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa > 1:327259/1‑101 (MQ=25)
gCCCCAAATAT.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa > 2:526267/1‑101 (MQ=25)
ccccAAATTC.CCCGGGGGGCC.CGGGGG.....G....G.....CGCCC..CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaaaa < 2:4563716/101‑1 (MQ=255)
ccaaaagccccGGGGGGCC.C..GGG.....G....GGC...CGCCC..CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGa < 2:6181352/93‑1 (MQ=255)
atat.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg > 2:4949334/1‑101 (MQ=37)
tat.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa > 2:9086589/1‑101 (MQ=37)
tat.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa > 1:705355/1‑101 (MQ=37)
tat.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa > 2:5037980/1‑101 (MQ=37)
aacgcgcGGGGGGCC.C..GGG.....G....G.....CGCACCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCTCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt < 2:4367386/95‑1 (MQ=255)
at.CCCGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt > 2:6823338/1‑101 (MQ=37)
cccGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg > 2:2877552/1‑101 (MQ=37)
ccGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc > 2:6564654/1‑101 (MQ=37)
ccGGGGGGCC.C..GGG.....GGGCAG.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc > 2:8870818/1‑101 (MQ=37)
||||
GATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGCAAGATGAAACCCATCCCTTTCATCTTGCCCCAAATAT.CCCGGGGGGCC.C..GGG.....G....G.....CG.....CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCC > NC_014034/1639905‑1640088
Base quality scores:
ATCG
< 3 ≤
ATCG
< 19 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|