| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,640,006 | +C | 2.3% | intergenic (+86/‑59) | mccB → / → mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,640,006 | 2 | .→C | 2.3% | 2.9 ‑4.5 0.0 | 209 | intergenic (+86/‑59) | mccB/mccA | methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha |
| Reads supporting (aligned to +/- strand): new base (1/2): ref base (193/11): total (194/15) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.06e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 296 total aligned reads displayed.
ATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGG....G.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC > NC_014034/1639906‑1640106
|
tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTTCCCCCAAAAT.CCC.GGGGGGCC..Ccggg....gg > 1:4270334/1‑100 (MQ=37)
tCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..Cgggg....gg < 2:3728467/101‑2 (MQ=255)
cTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..Cgggg....ggc < 1:3231846/101‑3 (MQ=255)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTTGGGG.AAGATGAAACCCATCCCTTTCCTTCTTTCCCCAAAATC.CCC.GGGGGGCC..Ggggg....ggg > 1:4563851/1‑99 (MQ=25)
ttCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..Cgggg....ggca < 1:4901576/101‑4 (MQ=255)
tCCGGATGTGACTTTCGATGCCTCCGGCGGGGGGATTTTGGGG.AAGAAGAAAACCAACCCCTT.CATCTTTCCCCCAATAT.CCC.CGGGGGCC..Cgggg....ggggg > 1:171706/1‑97 (MQ=255)
tCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..Cgggg....ggcag < 2:2886106/101‑5 (MQ=255)
cGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGG.CAGATGAAACCCCTCCCTTT.CCTCTTGTCCCCAATAT.CCCGGGGGGGCC..Cgggg....ggcgtg > 2:66026/1‑96 (MQ=25)
ggATGTGACTTTCGATGCCTCCGGCGGGGGTATTTTGGGG.AATATGAAAACCATCCCTTT.CATCTTTCCCCAAATATCCCC.GGGGGGCC..GGGGG....g.....c..ggggc > 2:4363115/1‑97 (MQ=25)
ggATGTGACTTTCGATGCCTCCGGCGGGGGTATTTGGGGC.AAGATGAAACCCATCCCCTT.CATCTTTCCCCCAATAT.CCC.GGGGGGCC..Cgggg....ggcagcgc > 1:8627627/1‑94 (MQ=37)
aTGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGG.AAGATGAAACCCATCCCTTT.CATCTTTCCCCAAATAT.CCC.CGGGGGCC..CGGGG....G........G...ccccgccc > 1:2832102/1‑97 (MQ=25)
tgtgACTTTCGATGCCTCCGGCGGGGATATTTGGGGG.AAGATGAAAACCACCCCCTT.CATCTTTCCCCCAATGA.CCC.CGGGGGCC..Cgggg....ggcggggcccc > 1:6393049/1‑91 (MQ=21)
ccTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGcc > 2:6933723/1‑101 (MQ=21)
cccGGGGGGGATTTTGGGGGA.AAGATAACCCCCCTCCTTTC.CCTTTTCCCCCAAATAC.CCG.GGGGGGCC..GGGGG....GGC...C..GCC.CCCCCCGCCACTTCCGCCAc < 1:6695880/100‑1 (MQ=255)
ggggggATTTTGGGGGCAAAGATAAACCCCCCCCCTTT.CTTTTTCCCCAAAATGC.CCG.GGGGGGCG..GGGGG....G.....CCGGCC.CCCCCCGCCACTTCCGCCACggg < 2:142251/99‑1 (MQ=255)
cggGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGc > 1:5299640/1‑101 (MQ=25)
cggGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGc > 2:1532628/1‑101 (MQ=21)
cggGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGc > 1:7364468/1‑101 (MQ=25)
cggGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGc > 1:7421925/1‑101 (MQ=25)
ggggATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCa > 2:6307684/1‑101 (MQ=25)
ggggATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCa > 2:6194160/1‑101 (MQ=25)
gggATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAg > 2:7546195/1‑101 (MQ=25)
gggATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAg > 2:5366609/1‑101 (MQ=25)
gggATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAg > 1:5095382/1‑101 (MQ=25)
gATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAgcg > 1:4737266/1‑101 (MQ=25)
gATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAgcg > 2:9027941/1‑101 (MQ=25)
gATATTGGGGGC.AAGATGAACCCCACCCTTTT.CATCTGCCCCAAAATAC.CCG.GGGGGGCCG.GGGGG....G.....C..GGCCCCCCCCGCCACTTCCGCCACGGGGCAgcg < 2:4495633/101‑1 (MQ=255)
tatTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGcc > 1:6583268/1‑101 (MQ=25)
tttgggggC.AGGAGCAACCCCTCCCCTTT.CCTCTT.CCCCAAAACC.CCC.GGGGGGCC..CGGGG....GGC...C..GGCCCCCCCCGCCACTTCCGCCACGGGGCAGCGccc < 1:619589/97‑1 (MQ=9)
atTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGccc > 1:1321019/1‑101 (MQ=25)
atTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGccc > 2:4749591/1‑101 (MQ=25)
tttGGGGG.AAAAATAACCCCCCCCCTTTCCATCTCCCCCCAAATCC.CGG.GGGGGGCCG.GGGGG....G.....C..GCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGccc < 1:7967255/101‑1 (MQ=255)
tttGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGcccc > 1:7554290/1‑101 (MQ=25)
ttGGGGG.AAAAAGAACCCCCTTCCTTT.CCTTTTCCCCCAAAATC.CCC.GGGGGGCC..CGGGG....GGC...C..GCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGcccc < 1:2060102/101‑1 (MQ=255)
tgggggC.AAGAGGAACCCCACCCTTTT.CATCTGCCCCAAAATCC.CCG.GGGGGGCCG.GGGGG....G.....C..GGCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCg < 1:9191086/99‑1 (MQ=255)
tGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg > 1:1424344/1‑101 (MQ=25)
tGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCgg > 1:7116763/1‑101 (MQ=25)
ggggC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGc > 2:7249915/1‑101 (MQ=25)
gggC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGcc > 1:9037053/1‑101 (MQ=25)
ggC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCg > 1:2407970/1‑101 (MQ=25)
gC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGt > 2:8477234/1‑101 (MQ=25)
c.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 2:3299270/1‑101 (MQ=25)
c.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 2:2243376/1‑101 (MQ=25)
c.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 1:4005176/1‑101 (MQ=25)
c.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGtt > 2:1039435/1‑101 (MQ=25)
aaGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 1:3865379/1‑101 (MQ=25)
aaGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTg > 2:3591808/1‑101 (MQ=25)
aGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa > 2:7382128/1‑101 (MQ=25)
aGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa > 1:6840855/1‑101 (MQ=25)
gaagAAACCCCTCCCTTT.CCTTCTTCCCCAAAATC.CCC.GGGGGGCC..CGGGG....GGGCCCC..C...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGa < 2:5484338/98‑1 (MQ=255)
aTGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg > 2:4622447/1‑101 (MQ=25)
aTGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACg > 1:2192256/1‑101 (MQ=25)
tGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGGAGCGCCCCGGCCGTTGACGa > 1:8825001/1‑101 (MQ=21)
tGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa > 2:4666865/1‑101 (MQ=25)
tGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGa > 1:7344826/1‑101 (MQ=25)
gAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa > 1:1135490/1‑101 (MQ=25)
aaaCCCCTCCCTTC.CCTCTTGCCCCAAATGC.CCC.GGGGGGCCGGGGGGG....G.....C..GCCCCCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGaa < 2:6651287/101‑1 (MQ=255)
aaaCCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg > 2:1860851/1‑101 (MQ=25)
aaaCCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAg > 2:2558581/1‑101 (MQ=25)
aaCCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg > 2:5143506/1‑101 (MQ=25)
aaCCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAgg > 2:8229702/1‑101 (MQ=25)
aCCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACNANGga > 1:4148239/1‑101 (MQ=21)
cccATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgag > 1:5736475/1‑101 (MQ=25)
ccATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGgaga > 2:3410930/1‑101 (MQ=25)
cATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAc > 2:5787473/1‑101 (MQ=25)
aTCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGAcc > 2:8063806/1‑101 (MQ=21)
tCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACcg > 1:1923666/1‑101 (MQ=25)
cccTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGGCCCGGCCGTTGACGAAGGAGGCcgc > 2:6514684/1‑101 (MQ=21)
cTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa > 2:2473384/1‑101 (MQ=25)
cTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa > 2:5233704/1‑101 (MQ=25)
cTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGa > 1:7849319/1‑101 (MQ=25)
ttt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt > 2:4330639/1‑101 (MQ=25)
ttt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGAt > 2:787272/1‑101 (MQ=25)
tt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 2:6479651/1‑101 (MQ=25)
tt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:1038152/1‑101 (MQ=25)
tt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:5951726/1‑101 (MQ=25)
tt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 2:3006380/1‑101 (MQ=25)
tt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:8543598/1‑101 (MQ=25)
tt.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATg > 1:8325347/1‑101 (MQ=25)
t.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGt > 1:8257205/1‑101 (MQ=25)
cATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 1:3498126/1‑101 (MQ=25)
cATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 2:6062034/1‑101 (MQ=25)
cATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGtt > 2:7280503/1‑101 (MQ=25)
ttGCCCCAAATAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCaa > 1:3581661/1‑101 (MQ=25)
aaTAT.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCt > 1:288661/1‑101 (MQ=25)
atat.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg > 2:4949334/1‑101 (MQ=37)
atat.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTg > 2:2784791/1‑101 (MQ=37)
tat.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGa > 2:9086589/1‑101 (MQ=37)
at.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATcccagc > 2:4189053/1‑97 (MQ=25)
at.CCC.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGAt > 2:6823338/1‑101 (MQ=37)
ccc.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCg > 2:6096267/1‑101 (MQ=37)
cc.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGc > 2:8870818/1‑101 (MQ=37)
c.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc > 2:3123419/1‑101 (MQ=37)
c.GGGGGGCC..CGGGGGGCAG.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGcc > 2:5697603/1‑101 (MQ=37)
ccggggggcag.....c..g...cCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGc > 2:2067820/11‑101 (MQ=255)
ggggggcag.....c..g...cCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCg > 2:363259/9‑101 (MQ=255)
gggggcag.....c..g...cCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCga > 1:5511059/8‑101 (MQ=255)
ggggcag.....c..g...cCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCgag > 1:6809132/7‑101 (MQ=255)
ggcag.....c..g...cCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGAt > 2:3893010/5‑101 (MQ=255)
gcag.....c..g...cCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATc > 1:7663735/4‑101 (MQ=255)
|
ATCTTCCGGATGTGACTTTCGATGCCTCCGGCGGGGATATTTGGGGC.AAGATGAAACCCATCCCTTT.CATCTTGCCCCAAATAT.CCC.GGGGGGCC..CGGGG....G.....C..G...CCCCCCGCCACTTCCGCCACGGGGCAGCGCCCCGGCCGTTGACGAAGGAGACCGCGATGTTTCAAAAGATCCTGATCGCCAACAGGGCCGAGATCGCC > NC_014034/1639906‑1640106
Base quality scores:
ATCG
< 3 ≤
ATCG
< 23 ≤
ATCG
< 31 ≤
ATCG
< 35 ≤
ATCG
< 41 ≤
ATCG
|