| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 974,198 | +GGGGGCT | 100% | intergenic (+78/+181) | RCAP_rcc00884 → / ← RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 974,198 | 1 | .→G | 100.0% | 18.7 | 19 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/13): ref base (0/0): total (6/13) | ||||||||||
| * | NC_014034 | 974,198 | 2 | .→G | 100.0% | 18.8 | 19 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/13): ref base (0/0): total (6/13) | ||||||||||
| * | NC_014034 | 974,198 | 3 | .→G | 100.0% | 18.8 | 19 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/13): ref base (0/0): total (6/13) | ||||||||||
| * | NC_014034 | 974,198 | 4 | .→G | 100.0% | 18.8 | 19 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/13): ref base (0/0): total (6/13) | ||||||||||
| * | NC_014034 | 974,198 | 5 | .→G | 100.0% | 14.5 | 18 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (5/13): ref base (0/0): total (5/13) | ||||||||||
| * | NC_014034 | 974,198 | 6 | .→C | 100.0% | 13.3 | 18 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (5/13): ref base (0/0): total (5/13) | ||||||||||
| * | NC_014034 | 974,198 | 7 | .→T | 100.0% | 16.6 | 18 | intergenic (+78/+181) | RCAP_rcc00884/RCAP_rcc00885 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (5/13): ref base (0/0): total (5/13) | ||||||||||
AGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCG.......TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG > NC_014034/974098‑974262
|||||||
aGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgccg > 1:1611385/1‑101 (MQ=255)
tGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACccgccgggggcgg > 1:6775869/1‑94 (MQ=255)
gCCGCGCAACTCGGACCGCCGCGGGAGGGCATTCAAAGGGCCCCCCCGGGGG.CGCTTTTTTTTTT.CGCCACGCTGTCGCGGGGCGCCccgccggggggctt < 2:5001764/101‑9 (MQ=255)
ccGCGCACCTCGGAACGCCGCCGGATGGTATCCAAAGGGCCCCCCCGGGGG.CTCTTTTTGTTTC.CGCCCCGCTGCCGCGTGGCGACccgccggggggcttc < 2:1939606/101‑10 (MQ=255)
ccGCGCACCGCTGGACGCCGCCGGATGGCATTCAAAAGGCCCCCCCCGGGC.CGCTTTTTTTTTC.CGCCCCGCTGTCGCGTGGCGCCccgccggggggcttc < 2:1006524/101‑10 (MQ=255)
cgcgCACCTCTGACCGCCGCCGGATGGCATTCAAAGGGCCCCCCCGGGGG.CGCTTTTTGTTTT.CGCCCCGCTGTCGGGTGGCGCCccgccggggggcttcg < 2:8355302/101‑11 (MQ=255)
cgGATGGCTTGCAAAGGGCCCCCCCGGGGG.CGCTTTTTTTTTT.CCCCCCGCGGCCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGt < 1:6210586/101‑1 (MQ=2)
gtcacATTAAAAGGGCCCCCCCGTGGT.CGCTTTTTTTTTT.CGCCCCGCTGGCGCGTGGCCCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAtt < 2:4439005/97‑1 (MQ=2)
tgcacttCAAACGCCCCCCCCGGGGG.CTCTTTTTTTTTC.CGCCACGTTGTCGCGCGGCCACCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAttt < 2:8137999/96‑1 (MQ=0)
gtccATTAAAACGGCCCCCCCGGGGC.CGCTTTTTTTTTC.CGCCCCGCTGTCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTAttt < 1:5962823/98‑1 (MQ=2)
gcatcaaaagGGCGCCCCCGGGGG.CGCTTTTTTTTTC.CCCCCCGCGGTCGGGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGc < 1:2338325/95‑1 (MQ=2)
ctttCAAACGGCGCCCCCCGGGG.CGTTTTTTTTTTC.CCCCCCGCTGTCTCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCa < 2:950250/99‑1 (MQ=2)
tCAAAGGGCCCCCCCGGGGG.CTCTTTTTTTTTC.CCCCGCGCTGTCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCa < 1:6425794/101‑1 (MQ=2)
cAAAGGGCCCCCCCCGGGC.CCTTTTTTTTTTC.CCCCCCGCTGCCGCGTGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCaa < 1:7300501/101‑1 (MQ=2)
aagggCCCCCCCCGGGG.CCTCTTTTTTTTTCCCCCACGCTGTCGCGTGGCCCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAg < 2:1587586/98‑1 (MQ=2)
gggCCCCCCCGGGGG.CGTTTTTTTTTTT.CCCCCCGCTGGCGCGTGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaaa < 1:7298404/100‑1 (MQ=2)
cgccccccccgGGGG.CGTTTTTTTTTTC.CGCCCCGCGGCCGCGTGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaaa < 1:4424133/96‑1 (MQ=2)
cccccccgGGGG.CCCTTTTTGTTTC.CGCCCCGCTGCCGCGGGGCGCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAg < 1:2768014/99‑1 (MQ=2)
ccccccccGGGGCCGCTTTTTTTTTT.CGCCCCGCTGCCGCGGGGCCCCCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGaaaaa < 1:5704987/99‑1 (MQ=2)
ccccGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCCGACCCCCCAGCGGCTTTGCACCAAGAAAAAACAGa > 1:2909050/1‑101 (MQ=16)
ggg.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGGCTCGGCCCCCGGACCCCCCCGCGTATTTGGACCAAAAAAAAACAGAcgggg > 2:8924496/1‑100 (MQ=12)
ggg.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCCGCGTATTTGCACCAAGAAAAAGCAGAcgggc > 2:8834024/1‑101 (MQ=18)
tttGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAAAAAAAGCAGACGGGCGGGGTCCg > 2:872852/1‑101 (MQ=18)
tGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCGCCCCCCGGGCCCCCCCGCGGCTTTGCACCCAGAAAAAGAAGACGGGCGGGGACCGGc > 1:2956943/1‑101 (MQ=9)
tt.CGCCACGCTGTCGCGTGGCGACCCGCCGGGGGGCTTCCCCCCCCGCACCCCCCAGCGCATTTGCACCAAGAAAAAGCAAACGGGCGGGATCCCGccagg > 1:7370770/1‑97 (MQ=9)
|||||||
AGGATGTTGCCGCGCAACTCTGAACGCCGCCGGATGGCATTCAAAAGGCGCCCCCCGGGG.CGCCTTTTGTTTT.CGCCACGCTGTCGCGTGGCGACCCGCCG.......TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGG > NC_014034/974098‑974262
Base quality scores:
ATCG
< 3 ≤
ATCG
< 10 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|