Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	974,308	+CC	100%	intergenic (+188/+71)	RCAP_rcc00884 → / ← RCAP_rcc00885	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,308	1	.→C	100.0%	13.9	19	intergenic (+188/+71)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (6/12):  ref base (0/1):  total (6/13)
*	NC_014034	974,308	2	.→C	100.0%	12.2	19	intergenic (+188/+71)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (6/11):  ref base (0/1):  total (6/13)

GCAGACGGGCGGGATCCGGCATGGC.CG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGGG...T...GTGCG.....GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTCAG  >  NC_014034/974239‑974382                                                                              ||                                                                                 gCAGCCGGGCGGGATGCGCAATGCC.CGCTGCGCAGCGGCTTGTTTACACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCt                                                  <  2:9111592/101‑1 (MQ=0)   agccgggcgggATCCGGCATGGC.CGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATA.CC.C.GGGG...G...GTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCg                                                <  2:6849956/98‑1 (MQ=9)          cgggACCCGGCATGGCGTC.TGGGCGGCGGCTTTTTTTCTCCTTGCGACAAATACCC.CGGGGG...TCC.GGGGGC....GGACCCCCCGGCGGGTCGCCTCGGCGACAg                                         <  1:8484935/101‑1 (MQ=2)             gATCCGGCATGGC.CGCTGCGCAGCGGCTTGTTTTCCCCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCg                                      <  1:2806748/101‑1 (MQ=9)               tCCGTCATGGC.CGCTGCACAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAg                                    <  2:1611338/101‑1 (MQ=2)               tCCGGCATGGC.CGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAg                                    <  2:2486427/101‑1 (MQ=11)                 cGGCATGGC.CGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCGG.GGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGc                                  <  2:3760642/101‑1 (MQ=2)                 cGGCATGGC.CGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGc                                  <  1:1641537/101‑1 (MQ=11)                     aTGGC.CGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGaaa                              <  2:3424245/101‑1 (MQ=11)                         gccgctGCGCAGCGGCTTGTATTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACTGCCGAGGCGCACTAc                           <  1:8834430/96‑1 (MQ=2)                            gctGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATAcccc                        <  2:4958861/99‑1 (MQ=11)                                cgcACCGGCTTGTTTCCCCCTGGCGACAAATATCCGG.GGGG...TCG.GGGGGC....GGACCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCcggcc                    <  2:5815710/101‑1 (MQ=2)                                      ggCTTGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACg              <  2:7252201/101‑1 (MQ=11)                                        tttGTTTCCGCCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGc            <  1:6945617/100‑1 (MQ=2)                                         ttGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGGCGCCGCCGCGGCCGCCGCGGGGGAAAACACCCGCCCCCACCGcc           >  2:6319615/1‑101 (MQ=0)                                          tGTTTTCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGGGGGCGCGGCGGCAGCCGCGGGGGAATAACCCCCCCCCACCGGCCg          >  2:6888089/1‑101 (MQ=0)                                              ttCACCTTGCGACAAATATCC.CGGGGG...TCCGGTGGC.....GGAGCCCCCGGCGGGGGGCGCCGGCGCCAGACGGGGCGGAAGAAACCGGCCGCAACGGCCggggg      >  1:1533918/1‑98 (MQ=0)                                               tCACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGGGGCCTCGGCGGCCGCCGCGGGGGAAGAACCCCGCCGCCACCGCCGGGtct     >  1:1807081/1‑101 (MQ=2)                                               tCACCTTGCGACAAATAGCC.C.GGGGGGCC...GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtct     <  1:5294916/101‑1 (MQ=2)                                                cACCTTGCGACAAATATCC.G.GGGGGCCC...GGGGGC....GGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCGGCCGCAACGGCCGGTtctc    <  2:1469899/101‑1 (MQ=2)                                                cACCTTGCGACAAATATCC.CGGGGG...TCC.GGGGGC....GGAGCCCCCGGCGGGGCGGCCCGGCGACCGCCGCGGCGGAAAACCCCGGCCGCCCCGGcacggtcgc    >  2:8178717/1‑93 (MQ=2)                                                  ccTTGCGACAAATATCC.CGGGGG...TCCGGGGGC.....GGAGCCCCCGGCGGGGGGCCTCGGGGGCAGCCGCGGCGGAAAAACACCGCCGCCCCAGCCgggcccccc  >  2:3614922/1‑94 (MQ=2)                                                                              ||                                                                                 GCAGACGGGCGGGATCCGGCATGGC.CG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCC.C.GGGG...T...GTGCG.....GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCTCAG  >  NC_014034/974239‑974382 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 41 ≤  ATCG