Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0140343,580,5900G→A100.0% 1.6 1intergenic (‑93/+38)RCAP_rct00051/RCAP_rcr00012tRNA‑Ala/16S ribosomal RNA
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

AGAGATATGAGGACGGCCTGGCCGCATATGAGGCTCTGACTGAGCCTCGTGCTAAGTGTCTTCTGTAGAGAGGAACAAGTTCTTCTCTGGGGAAGACATCCT  >  NC_014034/3580547‑3580648
                                           |                                                          
agagATATGAGGACGGCCTGGCCGCATATGAAGTTCTGACTGAACTTC.TGCTAAGTGTCTTCTGTAGAGAGGAACAAGTTCTTCTCTGGAGatcggaagag  >  1:3689456/1‑92 (MQ=14)
                                           |                                                          
AGAGATATGAGGACGGCCTGGCCGCATATGAGGCTCTGACTGAGCCTCGTGCTAAGTGTCTTCTGTAGAGAGGAACAAGTTCTTCTCTGGGGAAGACATCCT  >  NC_014034/3580547‑3580648

Base quality scores:  ATCG  < 3 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 36 ≤  ATCG  < 41 ≤  ATCG