| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,395,881 | C→A | 24.4% | intergenic (+693/‑238) | RCAP_rcc01306 → / → RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,395,881 | 0 | C→A | 24.4% | 0.0 ‑0.7 0.0 | 569 | intergenic (+693/‑238) | RCAP_rcc01306/RCAP_rcc01307 | Cas2 family CRISPR‑associated protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (64/74): ref base (210/211): total (276/293) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.93e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 1.00e+00 | ||||||||||
Only 100 of 601 total aligned reads displayed.
GGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGG > NC_014034/1395781‑1395981
|
gCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATcc < 1:9092110/101‑1 (MQ=255)
cGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCg > 1:1153850/1‑101 (MQ=255)
cGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCg > 2:236179/1‑101 (MQ=255)
gTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGGTAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCgg > 1:8200155/1‑101 (MQ=255)
gTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCgg < 1:4785729/101‑1 (MQ=255)
gTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCgg > 1:3762810/1‑101 (MQ=255)
tGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...t > 2:6511961/1‑101 (MQ=255)
ggATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...Tc > 2:4404649/1‑101 (MQ=255)
gATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..g < 1:2217169/101‑1 (MQ=255)
gATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..g < 2:2603834/101‑1 (MQ=255)
cGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.c > 2:8139903/1‑101 (MQ=255)
cGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.c > 2:5581224/1‑101 (MQ=255)
cGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...CC..GAg.c > 2:5468707/1‑101 (MQ=255)
gAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.cg > 2:5683986/1‑101 (MQ=255)
aaaCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAg.cgc > 2:6442721/1‑101 (MQ=255)
aCCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.cgcc.g > 2:7683025/1‑101 (MQ=255)
cgTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCg < 2:5233996/101‑1 (MQ=255)
aGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcc > 2:6761381/1‑101 (MQ=255)
aGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcc > 1:7640640/1‑101 (MQ=255)
gTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTccc < 2:215881/101‑1 (MQ=255)
ttGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTcccc < 1:4196794/101‑1 (MQ=255)
ccAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCcg < 2:3773256/101‑1 (MQ=255)
tGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggg > 2:8831390/1‑101 (MQ=255)
tGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggg > 2:7763331/1‑101 (MQ=255)
aTAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCggggg > 2:7974560/1‑101 (MQ=255)
tAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGc < 1:6804938/101‑1 (MQ=255)
aGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...CC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCg > 2:2747556/1‑101 (MQ=255)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTGCCCCCGCGGGGGCGTGGAt > 2:1003221/9‑101 (MQ=9)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGAt < 2:8312240/93‑1 (MQ=9)
caacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGAt < 1:5349325/93‑1 (MQ=9)
cGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:5016146/101‑1 (MQ=255)
cGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGGGGATc > 2:4206457/1‑101 (MQ=255)
aacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATc < 1:3694693/94‑1 (MQ=9)
aacctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATc > 1:4614776/8‑101 (MQ=9)
aacctatgTCGCGCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATc < 2:1233093/94‑1 (MQ=9)
gTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:6913876/101‑1 (MQ=255)
cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGa < 1:1787703/96‑1 (MQ=0)
cccggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGa > 1:602646/6‑101 (MQ=0)
acctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:4879703/95‑1 (MQ=9)
cgcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 2:2003215/97‑1 (MQ=2)
cctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGa > 2:8511203/6‑101 (MQ=9)
ggACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa > 1:6726806/1‑101 (MQ=255)
gcccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:1003239/98‑1 (MQ=2)
ctatgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGaa > 1:6463146/5‑101 (MQ=9)
cggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:2037097/98‑1 (MQ=2)
ggcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:3102999/99‑1 (MQ=2)
ggcGTCGCGCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:4273423/99‑1 (MQ=2)
gACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa < 1:6224343/101‑1 (MQ=255)
cccGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCGTGCGCGCCAT.GAATTC.A...TC..GAG.CGCCATCGAGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 1:2657028/3‑101 (MQ=2)
atgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATccacac > 2:1340075/3‑96 (MQ=9)
tgTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca < 1:3919646/100‑2 (MQ=9)
ggTCGCGCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TCCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAca < 1:736641/100‑2 (MQ=2)
cGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 2:6255251/101‑1 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGa > 2:3092871/1‑101 (MQ=255)
gTCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcaa > 2:5382293/1‑99 (MQ=9)
tCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGAt > 2:6957781/1‑101 (MQ=255)
tCGCTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 1:5887491/101‑1 (MQ=9)
gcGCTCCCCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAAt < 2:7132211/100‑1 (MQ=9)
gcGCCCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGAt < 2:591697/100‑1 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATg > 2:295976/1‑101 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGc > 1:3477329/1‑101 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCg > 1:5499652/1‑101 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGG...TCTTCTGTTGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGGGTGGGTCGagcaccc > 1:8942870/1‑95 (MQ=0)
cTCACCCCGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGGTCGAAACAATGCg > 2:4035197/1‑101 (MQ=9)
tcaccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCgg < 2:3487612/98‑2 (MQ=9)
tCCGCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGACGTGGATCGAAACGATGCGt > 1:5619794/1‑101 (MQ=255)
tCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGt > 2:1693938/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACTTCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGtt < 2:5102342/101‑1 (MQ=255)
caccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggc > 2:2464150/3‑99 (MQ=9)
caccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCCCCCCCCGCGGGGGCGAGGATCGAAACAATGCggc > 2:8590016/3‑99 (MQ=9)
accccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcg > 1:8700168/2‑98 (MQ=9)
ccccGCGGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATCCggcgc > 2:4571040/1‑97 (MQ=9)
ccccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCa < 2:8999403/101‑1 (MQ=255)
cccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCAt < 1:7455439/101‑1 (MQ=255)
cccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCAt < 2:1486228/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATg < 2:4900972/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATg < 1:517080/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATg < 2:3219003/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATg < 1:2866039/101‑1 (MQ=255)
ccGCGGGGGCGTGGATCGAAACCCCG.CGGC.GTCCCGAAGACGGTCTTC..TGG.TGCC.GCT.GC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcaccccgaac < 1:1465877/101‑10 (MQ=2)
cgcgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATgg < 1:8333774/101‑1 (MQ=255)
cgGGGGCGTGGATCGAAACTGTG.CCGG.TTCCCGGAGACGC...TG..GGG.C.CC.TCG.CACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACAATGCggcgcgggcc > 1:6639198/1‑92 (MQ=2)
cgGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGcc < 2:6633461/101‑1 (MQ=255)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt > 2:635560/1‑101 (MQ=255)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt < 1:7974900/101‑1 (MQ=255)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt > 1:2461093/1‑101 (MQ=255)
gggggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCt < 2:7241347/101‑1 (MQ=255)
gggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTAc < 2:4786632/101‑1 (MQ=255)
gggCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTAc > 1:8416052/1‑101 (MQ=255)
gTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCg < 1:7156067/101‑1 (MQ=255)
ggATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCggg > 2:612991/1‑101 (MQ=255)
ggATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCggg < 1:784391/101‑1 (MQ=255)
aTCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCa > 1:8596363/1‑101 (MQ=255)
cGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGt > 1:2978713/1‑101 (MQ=255)
aaaCTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTgg > 1:4457574/1‑101 (MQ=255)
gc.cTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCt > 2:1850680/1‑101 (MQ=255)
gc.cTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCt < 1:6361454/101‑1 (MQ=255)
tATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTccc > 1:1903090/1‑101 (MQ=255)
cATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCcgc > 1:1266537/1‑101 (MQ=255)
aTCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCcgcg > 1:3329256/1‑101 (MQ=255)
|
GGCGTGGATCGAAACCTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTGCG.CCGC.CTATCGCATCCGG...TC..GAG.CGCC.GCG.CA.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGATGCGTTCATGGCCTACGTCGGGCAGTGGACTGGTCGCTCCCCCCGCGGG > NC_014034/1395781‑1395981
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|