| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,434,397 | C→G | 20.3% | intergenic (‑176/‑782) | RCAP_rcc01334 ← / → RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,434,397 | 0 | C→G | 20.3% | 286.1 ‑0.4 ‑0.0 | 537 | intergenic (‑176/‑782) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator |
| Reads supporting (aligned to +/- strand): new base (50/58): ref base (185/239): total (237/300) | ||||||||||
| Fisher's exact test strand distribution p-value = 6.65e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.53e-01 | ||||||||||
Only 100 of 565 total aligned reads displayed.
GCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGG > NC_014034/1434297‑1434496
|
cTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCa > 1:3275012/1‑101 (MQ=255)
ccGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.Gc < 2:7874280/101‑1 (MQ=255)
cGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCt > 2:5397679/1‑101 (MQ=255)
cGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCt > 2:6924855/1‑101 (MQ=255)
gTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTg > 1:4846203/1‑101 (MQ=255)
gTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTg < 2:1400437/101‑1 (MQ=255)
ggATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCTCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.Cg > 1:3371110/1‑101 (MQ=255)
cGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCaa > 2:5164728/1‑101 (MQ=255)
gAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAAc > 1:6302128/1‑101 (MQ=255)
aaaCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGATCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAAcc > 2:6086804/1‑101 (MQ=255)
aaCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCt > 1:7445536/1‑101 (MQ=255)
aCAGGCTGCTTTGGGCGGAACCCCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCtt < 2:1628571/101‑1 (MQ=255)
aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCtt < 2:7570654/101‑1 (MQ=255)
aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCtt < 1:782941/101‑1 (MQ=255)
ggCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTc > 2:5893551/1‑101 (MQ=255)
gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTc < 2:1500665/101‑1 (MQ=255)
ctTTAGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTcc < 2:7979285/101‑1 (MQ=255)
tttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTccc < 1:8345691/101‑1 (MQ=255)
ttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTcccc < 2:8429031/101‑1 (MQ=255)
tGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTccccc < 1:4749334/101‑1 (MQ=255)
gggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTcccccc < 1:1425989/101‑1 (MQ=255)
gggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTcccccc > 1:2030782/1‑101 (MQ=255)
ggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCANCCTT..GTCGCTCCCCCcg > 2:2419844/1‑101 (MQ=255)
cGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCcgcg < 1:6269598/101‑1 (MQ=255)
ggAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCgg > 1:8182525/1‑101 (MQ=255)
gAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCggg > 2:5587558/1‑101 (MQ=255)
cTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTg < 2:3630391/101‑1 (MQ=255)
cTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTg < 1:2134545/101‑1 (MQ=255)
gcgggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTg < 1:8705621/91‑1 (MQ=2)
aTCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGGgggt > 2:3253966/1‑99 (MQ=255)
tCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATc < 1:5893786/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGCTCg > 2:3744877/1‑101 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:343357/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCg < 1:4335561/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:4130292/101‑1 (MQ=255)
ggctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGAt < 2:6475276/94‑1 (MQ=2)
ggctagcgTCGCTCCCCCCGCGGCGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGAt < 2:2935419/94‑1 (MQ=2)
ctgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGa > 2:9182526/1‑101 (MQ=255)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGGTc > 1:4488511/7‑101 (MQ=2)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATc < 2:2150852/95‑1 (MQ=2)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATc > 2:6573099/7‑101 (MQ=2)
ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCg < 2:4874240/96‑1 (MQ=2)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAaca > 1:3536847/1‑101 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAaca > 2:8767354/1‑101 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAaca < 2:177833/101‑1 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCCCCGGGGCGCGGCTAGAAaca > 2:6262971/1‑101 (MQ=37)
atcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGaa < 1:7275722/98‑1 (MQ=2)
tcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa > 1:3034259/3‑101 (MQ=2)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 1:3769151/101‑1 (MQ=255)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 2:5781825/101‑1 (MQ=255)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 1:6925140/101‑1 (MQ=255)
ggTCGCTCCCCCCGCGGGGGCGCGGATCGAAAC..G..TCTCCT.CTCTG.CTTCACG.GCTG.CGACAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACg < 1:1606295/101‑1 (MQ=255)
cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GGTTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAac < 2:3947337/100‑1 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg < 2:1148668/101‑1 (MQ=255)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..CTGCTGACACCGCCAACAAA.TATGTGGTCAACACT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacg > 2:184771/1‑100 (MQ=2)
tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGa > 1:1882574/1‑101 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGNAAC..N..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt < 1:5788804/101‑1 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGGGGATCGAAaccct > 1:1212164/1‑98 (MQ=2)
cGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt < 2:201222/101‑1 (MQ=255)
cGCTCCCCCCGCAGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgct < 1:9117689/101‑4 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt < 2:8846213/101‑1 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc < 1:7919934/101‑6 (MQ=2)
cTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGCTTg > 2:7291494/1‑101 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg < 2:7166702/101‑1 (MQ=255)
tCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgct > 1:5579428/1‑95 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgct > 1:5266945/1‑95 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg > 2:2338575/1‑94 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg < 2:3140834/101‑8 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg > 1:4967330/1‑94 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa > 1:8987469/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa > 1:6640417/1‑101 (MQ=255)
cccccGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctga < 2:9042635/101‑9 (MQ=2)
ccccGCGGGGGCGTGGATCGAAACGGG..TCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctgac < 1:8791923/101‑10 (MQ=2)
ccccGCGGGGGCGTGGATCGAAAC..T..TGTCTG.ACGCG.CTCATCA.GC.A.CGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaaggac > 2:7049686/1‑94 (MQ=37)
ccccGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATg < 1:6428934/101‑1 (MQ=255)
ccccGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATg < 2:8549517/101‑1 (MQ=255)
gggCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAg < 1:8528825/101‑1 (MQ=255)
ggCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAgg < 1:2734648/101‑1 (MQ=255)
tGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa < 2:6752850/101‑1 (MQ=255)
tGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa < 1:5397863/101‑1 (MQ=255)
ggATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg < 1:604482/101‑1 (MQ=255)
cGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt > 1:107803/1‑101 (MQ=255)
aaC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc > 2:5313773/1‑101 (MQ=255)
aC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCa < 1:7062775/101‑1 (MQ=255)
aC..G..ACTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCATTGcg > 2:823431/1‑100 (MQ=255)
g..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt < 2:4445949/101‑1 (MQ=255)
tctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc < 1:4099684/101‑1 (MQ=255)
tctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc < 2:22564/101‑1 (MQ=255)
ctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg > 2:6350214/1‑101 (MQ=255)
ctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg < 1:4519346/101‑1 (MQ=255)
ctcCG.ATCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg < 1:2539399/101‑1 (MQ=255)
cG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc > 2:4956640/1‑101 (MQ=255)
g.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGCCAGGCTTTGCAggacgtcc > 1:4017369/1‑94 (MQ=255)
g.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc < 1:7602872/101‑1 (MQ=255)
g.CTCTG.CTTCAAG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc < 2:765171/101‑1 (MQ=255)
ctctG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccc < 1:7689059/101‑1 (MQ=255)
tctG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc < 2:4534157/101‑1 (MQ=255)
ctG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc < 2:4636338/101‑1 (MQ=255)
tCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgg > 2:2734303/1‑101 (MQ=255)
tCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgg < 2:107803/101‑1 (MQ=255)
|
GCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..G..TCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGG > NC_014034/1434297‑1434496
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|