| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,434,398 | A→T | 0.9% | intergenic (‑177/‑781) | RCAP_rcc01334 ← / → RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,434,398 | 0 | A→T | 0.9% | 3.6 0.0 ‑0.1 | 530 | intergenic (‑177/‑781) | RCAP_rcc01334/RCAP_rcc01335 | hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator |
| Reads supporting (aligned to +/- strand): new base (2/3): ref base (230/293): total (233/297) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.51e-01 | ||||||||||
Only 100 of 553 total aligned reads displayed.
CTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGG > NC_014034/1434298‑1434496
|
cTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCa > 2:8246442/1‑101 (MQ=255)
cTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCa > 1:3275012/1‑101 (MQ=255)
ttACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCAc < 1:4828454/101‑1 (MQ=255)
ttACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCAc > 2:4948463/1‑101 (MQ=255)
aCCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACg.g > 2:2403599/1‑101 (MQ=255)
ctgTGGATCGAACATTGCTGCCTTGGTCGGAACACCTTATCCTTCTTGGTTGCTCCCCCCGCGGGTGCGTTGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.Gc < 2:5900351/99‑1 (MQ=255)
cGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCt > 1:7597707/1‑101 (MQ=255)
cGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCt > 2:5397679/1‑101 (MQ=255)
ggATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCTCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.Cg > 1:3371110/1‑101 (MQ=255)
tCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTcc > 2:4489226/1‑100 (MQ=255)
cGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCaa > 2:1041980/1‑101 (MQ=255)
gAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAAc > 1:6302128/1‑101 (MQ=255)
aaaCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCAAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAAcc > 2:6597241/1‑101 (MQ=255)
aaaCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGATCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAAcc > 2:6086804/1‑101 (MQ=255)
aaCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCt < 2:1771513/101‑1 (MQ=255)
aCAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGGCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCCCG.GCTG.CGTCAACCtt > 1:6568961/1‑101 (MQ=255)
gctgctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.Cg > 1:2022791/1‑101 (MQ=255)
gctTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTc > 2:7051810/1‑101 (MQ=255)
ttGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTcccc < 2:8429031/101‑1 (MQ=255)
tGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTccccc < 1:4749334/101‑1 (MQ=255)
gggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTcccccc < 1:1425989/101‑1 (MQ=255)
ggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCcg > 2:7587597/1‑101 (MQ=255)
ggCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCcg > 2:4052354/1‑101 (MQ=255)
cGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCcccg > 2:1318303/1‑101 (MQ=255)
ggAACGCCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCgg < 2:5708825/101‑1 (MQ=255)
gAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCggg > 2:5587558/1‑101 (MQ=255)
gAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCggg > 1:9083024/1‑101 (MQ=255)
aaCACCTGAGCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCgggg < 2:6939275/101‑1 (MQ=255)
acCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCg > 2:3929476/1‑101 (MQ=255)
acCAGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCggggggg > 1:7213238/1‑99 (MQ=255)
cTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTg < 1:2134545/101‑1 (MQ=255)
aTCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGac > 2:225014/1‑100 (MQ=255)
tCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATc < 1:5893786/101‑1 (MQ=255)
tCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATc < 1:2474972/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCg < 1:4335561/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCg < 2:4788773/101‑1 (MQ=255)
ccTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCg > 2:3713093/1‑101 (MQ=255)
ctgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGa > 2:9182526/1‑101 (MQ=255)
tgctgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGaa < 1:5260915/101‑1 (MQ=255)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGGTc > 1:4488511/7‑101 (MQ=2)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATc < 2:7885961/95‑1 (MQ=2)
gctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATc < 2:2150852/95‑1 (MQ=2)
ctatcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCg > 2:4409295/6‑101 (MQ=2)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGACAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAaca < 2:6752980/101‑1 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAaca > 1:8311215/1‑101 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAaca > 2:8767354/1‑101 (MQ=255)
tgGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCCCCGGGGCGCGGCTAGAAaca > 2:6262971/1‑101 (MQ=37)
tcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGaaa > 1:3034259/3‑101 (MQ=2)
tcgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGaaa < 1:3545041/99‑1 (MQ=2)
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacac < 1:3769151/101‑1 (MQ=255)
ggTCGCTCCCCCCGCGGGGGCGCGGATCGAAAC..GTCTCCT.CTCTG.CTTCACG.GCTG.CGACAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACg < 1:1606295/101‑1 (MQ=255)
cgTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAac > 1:7677790/2‑101 (MQ=2)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACgg < 1:7824828/101‑1 (MQ=255)
gTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GCTGCTGACACCGCCAACAAA.TATGTGGTCAACACT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacg > 2:184771/1‑100 (MQ=2)
tCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGa > 1:1882574/1‑101 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGNAAC..NTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt < 1:5788804/101‑1 (MQ=255)
cGCTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGGGGATCGAAaccct > 1:1212164/1‑98 (MQ=2)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt > 2:79879/1‑101 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt < 2:4584378/101‑1 (MQ=255)
gCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt < 2:8846213/101‑1 (MQ=255)
cTCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgc < 1:6906154/101‑6 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgct > 1:5579428/1‑95 (MQ=2)
tCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc > 2:3326647/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg > 1:4967330/1‑94 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg < 2:7238310/101‑8 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg < 1:7427006/101‑8 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctg < 2:5301059/101‑8 (MQ=2)
ccccccGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa > 1:7881878/1‑101 (MQ=255)
ccccccGCGGGGGCGTGGATCGAAAC..GTCTCCC.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCa < 1:6265211/101‑1 (MQ=255)
cccccGCGGGGGCGTGGATCGAAACGGGTCGAAG.ACCTG.CTTGACGCGCTG.GATCTGCGGC..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAacgctgctga < 2:9042635/101‑9 (MQ=2)
cccccGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCAt < 2:2895605/101‑1 (MQ=255)
ccccGCGGGGGCGTGGATCGAAAC..TTGTCTG.ACGCG.CTCATCA.GC.A.CGTCAAGATTCAGT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaacgac < 1:8791791/101‑8 (MQ=37)
cgGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc > 2:3057753/1‑101 (MQ=255)
cgGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc > 1:7052891/1‑101 (MQ=255)
cgGGCGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc < 2:3536740/101‑1 (MQ=255)
ctgggCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg < 2:7678107/99‑1 (MQ=255)
gggCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCgcg > 2:1611077/1‑99 (MQ=255)
ggCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAgg < 1:2734648/101‑1 (MQ=255)
ggCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAgg < 1:5414358/101‑1 (MQ=255)
cGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa > 2:2733843/1‑101 (MQ=255)
tGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACa < 2:2331908/101‑1 (MQ=255)
ggATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg < 1:604482/101‑1 (MQ=255)
cGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt > 1:107803/1‑101 (MQ=255)
gAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt < 1:8177462/101‑1 (MQ=255)
gAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt > 2:1476317/1‑101 (MQ=255)
gAAAC..GGCTCCG.CTCTT.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt < 1:8696868/101‑1 (MQ=255)
gAAAC..GGCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt < 2:1110265/101‑1 (MQ=255)
aaaC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg > 2:3225394/1‑101 (MQ=255)
aaaC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg > 1:6346989/1‑101 (MQ=255)
c..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg < 1:848887/101‑1 (MQ=255)
tctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc < 1:4099684/101‑1 (MQ=255)
tctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc > 2:6479084/1‑101 (MQ=255)
ctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg > 2:6350214/1‑101 (MQ=255)
ctcCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg < 1:4519346/101‑1 (MQ=255)
cG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTc < 2:1972192/101‑1 (MQ=255)
g.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGCCAGGCTTTGCAggacgtcc > 1:4017369/1‑94 (MQ=255)
ctctG.CTTCACG.GCTG.CGTCAACCTT..GTCCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc < 1:8941057/101‑1 (MQ=255)
tctG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc > 2:7315799/1‑101 (MQ=255)
ctG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc < 2:8570103/101‑1 (MQ=255)
g.CTTCACG.GCTG.CGTCAACCTT..GT.CGCCCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg < 2:5147257/101‑1 (MQ=255)
|
CTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GTCTCCG.CTCTG.CTTCACG.GCTG.CGTCAACCTT..GT.CGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGG > NC_014034/1434298‑1434496
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|