| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,696,179 | A→C | 4.4% | intergenic (‑107/+118) | RCAP_rcc01564 ← / ← mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,696,179 | 0 | A→C | 4.4% | 40.8 0.0 ‑0.1 | 469 | intergenic (‑107/+118) | RCAP_rcc01564/mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (11/10): ref base (227/221): total (238/231) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.55e-01 | ||||||||||
Only 100 of 480 total aligned reads displayed.
CCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCCTTTC.G.G.CAATTCCA.CCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGCCC > NC_014034/1696082‑1696283
|
cAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTCTG.C.CAATTca > 1:5553873/1‑100 (MQ=255)
aaaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTcac < 1:5286059/101‑3 (MQ=255)
aaaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTcac < 1:4653035/101‑3 (MQ=255)
aaaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTcac < 1:7921472/101‑3 (MQ=255)
aaaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTcac > 2:8330812/1‑99 (MQ=255)
aaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.G.CCAATTCA.cc > 1:8107541/1‑101 (MQ=255)
aaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.G.CCAATTCA.cc > 1:6684390/1‑101 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.G.CCAATTCA.ccc < 2:2536666/101‑1 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.G.CCAATTCA.cccc < 1:645836/101‑2 (MQ=37)
gCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.G.CCAATTCA.CCCcgg > 2:759173/1‑101 (MQ=37)
ccTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCggg < 2:1735253/101‑1 (MQ=37)
cTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGa < 2:2348854/101‑1 (MQ=255)
cTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGa < 2:5858495/101‑1 (MQ=255)
gAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTACC.CCCGGGatg > 2:4232428/1‑99 (MQ=255)
aaTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGatgt < 1:1333073/101‑4 (MQ=255)
aTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGatgtt > 1:7000019/1‑97 (MQ=25)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTg > 1:5926602/1‑101 (MQ=255)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTg < 2:357226/101‑1 (MQ=255)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTg < 1:2194374/101‑1 (MQ=255)
tGAACGTCTGTTTAATGTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTg < 2:1987588/101‑1 (MQ=255)
aaCGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTggg < 2:3042882/101‑1 (MQ=255)
gTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCa > 1:8629527/1‑101 (MQ=255)
cTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaag < 1:6806929/101‑2 (MQ=255)
gTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggt < 1:4046330/101‑4 (MQ=255)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggtg < 1:3171981/101‑5 (MQ=255)
tttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggtg > 1:937686/1‑97 (MQ=19)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggtga > 1:7179833/1‑96 (MQ=255)
tAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggtgaa < 1:3432965/101‑7 (MQ=255)
tAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggtgaa < 2:4820245/101‑7 (MQ=255)
aaTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCaaggtgaaa < 1:5807632/101‑8 (MQ=255)
aTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAac < 1:6180845/101‑1 (MQ=16)
tttCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAaca < 1:3918602/101‑2 (MQ=255)
cGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacacct > 1:474095/1‑97 (MQ=255)
gAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacacctt > 1:9120559/1‑96 (MQ=12)
gAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacacctt < 2:4512623/101‑6 (MQ=255)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttg > 1:3768502/1‑95 (MQ=255)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc > 2:7690978/1‑94 (MQ=255)
tCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgct < 1:4390118/101‑9 (MQ=255)
cTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTTGGCCAA..GGTGAAacaccttgcttt > 2:4543699/1‑91 (MQ=255)
cTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgcttt < 2:6073741/101‑11 (MQ=255)
cACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCt < 1:1117682/101‑1 (MQ=255)
cACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCt < 1:1745840/101‑1 (MQ=255)
aCGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCtt < 1:2400185/101‑1 (MQ=9)
gAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTgg < 2:1375216/101‑1 (MQ=255)
gAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTgg > 1:4839558/1‑101 (MQ=9)
aTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgcg > 2:3445312/1‑101 (MQ=255)
aTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgcg > 2:4674996/1‑101 (MQ=255)
ttttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgcgc > 1:9000840/1‑101 (MQ=9)
ttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaa > 2:5131253/1‑101 (MQ=255)
ttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGACAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaa > 1:3331828/1‑101 (MQ=255)
tGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaaa < 1:186579/101‑1 (MQ=255)
tGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaaa > 2:1655709/1‑101 (MQ=9)
tGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaaa < 2:92221/101‑1 (MQ=255)
gCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt > 1:5488121/1‑101 (MQ=255)
gCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt < 1:4277184/101‑1 (MQ=9)
gCAAGGAGGGGAGAGGGGC..CCTGCCCCGCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt < 2:7048738/101‑1 (MQ=9)
cAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATa < 2:474087/101‑1 (MQ=255)
cAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATa > 2:6671757/1‑101 (MQ=255)
cAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATa > 2:8145966/1‑101 (MQ=255)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc > 2:4399481/1‑101 (MQ=9)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc < 2:3255654/101‑1 (MQ=255)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc < 1:8331175/101‑1 (MQ=255)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc > 1:6150031/1‑101 (MQ=9)
aggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACg > 1:97208/1‑101 (MQ=255)
ggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGc > 1:4434701/1‑101 (MQ=255)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct < 2:6914665/101‑1 (MQ=9)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct < 1:5721986/101‑1 (MQ=9)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct < 1:1576521/101‑1 (MQ=9)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct > 2:7878682/1‑101 (MQ=12)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct > 1:4540461/1‑101 (MQ=9)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 2:1142843/101‑1 (MQ=255)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 2:8804757/101‑1 (MQ=255)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 2:8629141/101‑1 (MQ=255)
agaggggcgctGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGc < 2:5330525/91‑1 (MQ=255)
gcgctGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAg < 1:8457017/97‑1 (MQ=255)
cgctGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAgg < 1:2787232/98‑1 (MQ=16)
cgctGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCCAAgg > 1:2942640/4‑101 (MQ=16)
ctGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGc < 1:1264021/100‑1 (MQ=255)
tGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa < 2:642616/101‑1 (MQ=16)
tGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa > 2:4078980/1‑101 (MQ=19)
tGCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa < 2:5614868/101‑1 (MQ=16)
gCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCaa > 1:7503979/1‑101 (MQ=19)
gCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCaa < 2:3768393/101‑1 (MQ=255)
gCCCCTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCaa > 2:221261/1‑101 (MQ=255)
cccTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc > 1:7420814/1‑101 (MQ=255)
cccTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc < 2:6181029/101‑1 (MQ=16)
cccTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc > 2:5220212/1‑101 (MQ=19)
cccTCCTGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGc < 1:7723289/101‑1 (MQ=16)
tcctGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcgc > 2:5395481/4‑101 (MQ=255)
tcctGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcgc > 1:2575379/4‑101 (MQ=255)
tcctGGCCTTTC.G.GCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGCCCCGAAGGGCAAGAcgc > 1:360605/4‑101 (MQ=16)
gCCTTTC.GCC.CAATTCCC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGa < 2:8089587/101‑1 (MQ=19)
ttC.G.GCCAATTCCC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgc < 2:1831803/101‑1 (MQ=25)
c.G.G.CCAATCCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgcgc < 2:9014228/101‑1 (MQ=19)
cggccAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgcgc < 2:4984176/97‑1 (MQ=25)
gccAATCCCC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCgg < 2:2445342/99‑1 (MQ=25)
ccAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGc > 1:4976106/2‑101 (MQ=255)
cAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGcc > 2:2695705/1‑101 (MQ=255)
aaTTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAAC..CCCTTGCTTTTTCTGGGCGCAAATCCGCCTCTGGCCCGAAGGCCAAGCCGCGCCGAAGGCGCGGccc < 1:2019150/101‑1 (MQ=255)
aaTTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGAGCAAGCCGCGCCGAAGGCCAGGccc > 2:7234286/1‑101 (MQ=19)
|
CCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCCTTTC.G.G.CAATTCCA.CCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGCCC > NC_014034/1696082‑1696283
Base quality scores:
ATCG
< 3 ≤
ATCG
< 23 ≤
ATCG
< 30 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|