| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,155 | C→A | 1.7% | intergenic (‑138/+154) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,155 | 0 | C→A | 1.7% | 4.7 ‑2.3 ‑0.0 | 339 | intergenic (‑138/+154) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/0): ref base (215/118): total (221/118) | ||||||||||
| Fisher's exact test strand distribution p-value = 9.58e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.60e-01 | ||||||||||
Only 100 of 443 total aligned reads displayed.
TTTTGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGG > NC_014034/3068055‑3068255
|
ttGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCt < 2:1301031/101‑1 (MQ=255)
ttGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCt > 1:1954880/1‑101 (MQ=255)
tGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTc > 2:317280/1‑101 (MQ=255)
tGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTc < 1:616306/101‑1 (MQ=255)
tGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTc < 2:6950478/101‑1 (MQ=255)
tGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTc > 2:224771/1‑101 (MQ=255)
gCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCg > 1:1215879/1‑101 (MQ=255)
gCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCg < 1:1171082/101‑1 (MQ=255)
gATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGcc < 2:1824646/101‑1 (MQ=255)
gATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGcc < 1:7669621/101‑1 (MQ=255)
gATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCCAGGGCCCAAAGG.CCCTCGGcc > 2:4260575/1‑101 (MQ=255)
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.a > 2:7469195/1‑101 (MQ=255)
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.a > 2:8784093/1‑101 (MQ=255)
tCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.Agc < 2:3358585/101‑1 (MQ=255)
cAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGcgcccg > 1:5658973/1‑101 (MQ=255)
aaCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGcgcccgc > 2:3299338/1‑101 (MQ=255)
aaCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGcgcccgc > 1:7326377/1‑101 (MQ=255)
aaCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGcgcccgc > 2:5153577/1‑101 (MQ=255)
aCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGcgcccgcc > 1:3309413/1‑101 (MQ=255)
ccGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCgcccgccc > 1:5407723/1‑101 (MQ=255)
ccGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCgcccgccc < 2:7739996/101‑1 (MQ=255)
cGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGcccgcccc < 2:1722011/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGcccgccccg < 1:379662/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGcccgccccc > 2:7170510/1‑100 (MQ=255)
aaCGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCccgccccgcc < 1:8045559/101‑1 (MQ=255)
cGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCa > 1:2632500/1‑101 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCAt < 2:2807842/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATg > 2:1426861/1‑101 (MQ=255)
tGGGCGGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCG.AGCGCCCGCCCCGCCCACgg > 1:7237708/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATggc > 1:8148026/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATggc < 1:6075451/101‑1 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATggc.ggg < 2:4550474/101‑1 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATggc.gggg > 1:8739067/1‑100 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.Ttc < 1:5218211/101‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.Ttct < 2:3578909/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.Ttctc > 1:2783319/1‑101 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.c > 2:3966221/1‑101 (MQ=255)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.cc < 1:3621937/101‑1 (MQ=255)
ggCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.ccc < 2:4845595/101‑1 (MQ=255)
ggCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.ccc < 1:7780299/101‑1 (MQ=255)
ggCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.CTCTcg.ccc > 1:3464003/1‑101 (MQ=255)
gCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.cccg > 2:5638020/1‑101 (MQ=255)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.cccgcc > 2:2027852/1‑101 (MQ=255)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTcg.cccgcc > 1:4779698/1‑101 (MQ=255)
aTCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.Cccgccg > 2:57731/1‑101 (MQ=255)
tCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCgg < 2:8397469/101‑1 (MQ=255)
gAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGgggcgg > 1:2127396/1‑101 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGgggcgggg > 2:379554/1‑100 (MQ=255)
gTCATGCGGACCAGAAGTCCCGTGACCGCCGGGGGCCCAAAGG.CCCTCGGCC.TGCGCCCGCCCCGCCATCGGC.GGGGGCGCTCGCG.CCCGCCCggccgggg > 2:3696787/1‑100 (MQ=18)
aTGCGGGACAGGGTTCCCGCGACCGCCGAGTGCCCAAA.G.CACTCGGCC.AGCGCCCCCCCCGCCCATGGC.GGGCGA.TTCTCG.CCCCCCGGGGCCGGGGCCgg > 1:1732443/1‑101 (MQ=17)
aTGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCg < 1:6824721/101‑1 (MQ=255)
aTGCGGAACAGTGCCCTCGTGCCCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCg < 1:2397817/101‑1 (MQ=255)
cGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCgggc > 1:7878682/1‑99 (MQ=255)
gAACAGTGGCCTCGTGCCCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCctc < 1:7049398/101‑1 (MQ=255)
gAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCGCAGGGC.GGGCGA.GGCACC.CCAGCCGCGGCCGGCGCGGGcccc > 1:2918726/1‑99 (MQ=14)
gAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGGGC.TTCTCG.CCCCCCCGGGCGGGCCCCCGccct > 2:6520470/1‑99 (MQ=17)
actgTGCCCTCGTGCCCGCCGAGGCCCAAAGGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTctg < 2:7946725/98‑1 (MQ=14)
accgTGGCCTCGGGCCCGCCGAGGGCCCAAAGC.CCCTCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTctg < 2:8916513/98‑1 (MQ=14)
aCAGGGGCCTCGTGCCCGCCGAGGGCCCAAGGG.CCCTCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTctg < 2:5407538/101‑1 (MQ=14)
cAGTGCCCTCGGGCCCGCCGGGGCCCCAAAGC.CCCTCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTctgc < 1:3215453/101‑1 (MQ=11)
agaagtcccGTGACCGCCGGGGGCCCAAAGG.CCCTCGGCC.TGCGCCCGCCCCGCCATCGGC.GGGCGCGTTCCCG.CCCCCCGGGGTGCGGGCCGGGCCctgc > 2:7411924/9‑101 (MQ=14)
aatGGCCCCGTGACCGGCGAGGGCCCAAAGG.CCCTCGGCC.TGCGCCCGCCCCGCCATCGGCGGGGGGC.GTCCCG.CCGCCCGGGGCGGGCGGCggacccccg > 2:1615408/3‑94 (MQ=14)
aGTGCCCTGGTCCCCGCGGAGGGCCCAAAGG.CCCTCGGCG.GGCCCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTctgct < 2:7080924/101‑1 (MQ=14)
tGGCCTCGTGCCCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCtgctgc < 1:1059178/101‑1 (MQ=255)
ggCCTCGGGCCCGCCGAGGCCCCAAGGC.CCCGCGCCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTgcg < 1:2027913/101‑1 (MQ=14)
tCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCCCTGCTGCGCCTg > 1:3864218/1‑101 (MQ=255)
ccgggcccgccgAGGGCCCAAAGG.CCCTCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTg < 1:7539127/95‑1 (MQ=255)
cgggcccgccgGGGGCCCAAAGC.CCCGCGCCC.GGCCCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTgg < 1:3123682/96‑1 (MQ=11)
cGTGACCGCCGGGGGCCCAAGGG.CCCCCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTgg < 2:3874410/101‑1 (MQ=14)
cGTGACCGCCGGGGGCCCAAAGG.CCCTCGGCC.TGCGCCCGCCCCGCCATCGGC.GGGCGCGGTTGCC.CCCCCGGGGGCGGGCGGGGGGCGCTGCCGCGCCTg > 2:8311405/1‑101 (MQ=2)
cGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCTgg > 1:355807/1‑101 (MQ=255)
tgccagccgGGGGCCCAAAGG.CCGCCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGGGC.TTCTCGCCCCCCCCGGCCGGGCGCCGGCCGC.GGTGCGCCttcgg > 2:3023185/6‑97 (MQ=14)
ccgccgGGGCCCCAAGGG.CCCCCGCCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 1:2974036/101‑1 (MQ=14)
cgccgA.GGCCCAAAGGCCCCCCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAAc < 2:2599252/101‑1 (MQ=14)
gccgAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCTGGGGGAACg > 1:8281264/1‑101 (MQ=255)
ccgGGGGCCCCAAGGCCCCCCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACg < 1:7595239/101‑1 (MQ=14)
cccggggCCAAAAGG.CCCCCGGCCGGGGGCCCGCCCCGCCCATGCC.GGGCGC.TTCTCC.CCCGCCGGGGCGGCCGCCGGCCTCTGCTGCGCCTGGGGAAACg < 1:412962/97‑1 (MQ=14)
cgAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGGGCCCGCCTCTGCCGCGCCTGGGGGAACggg > 2:3065889/1‑100 (MQ=17)
gggggCCCAAGGC.CCCTCGCCC.AGCCNCNGNCCCGCCCAGGGC.GGGCGC.TTCTCG.CCCGCGGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTc < 1:5863725/99‑1 (MQ=17)
gAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCCGGGGGAACGGTc > 1:6648065/1‑101 (MQ=255)
ggggGCCAAAGGCCCCTCGCCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTc < 2:7581682/100‑1 (MQ=17)
gggCCAAAGGG.CCCCCGGCC.AGCGCCCCCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCtt < 1:509586/101‑1 (MQ=17)
ggCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGGGCCGGCCTCTGCTGCGCCTGGGGAGACGGGCTTg > 2:6055662/1‑101 (MQ=255)
ggCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGGGCCGGCCTCTGCCGCGCCTGGGGGAACGGGCTTg > 1:1839066/1‑101 (MQ=17)
gCCAAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGGAACGGTCTTgg > 1:8803831/1‑101 (MQ=255)
cccAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGG.GGGCGC.TTCTCG.CCCGCCGGGGCGAGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGc > 1:6573064/1‑101 (MQ=255)
cAAGGG.CCCCCGCCC.GGCCCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCAc < 1:1617151/101‑1 (MQ=18)
caaggccccTCGGCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCAc < 2:6173878/95‑1 (MQ=255)
aaaGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCCGCCCCCGCCGCGCCTGGGGAAACGGGCTTGGCAcc > 1:396260/1‑101 (MQ=17)
aggg.CCCTGGGCC.GGCGCCCGCCCCGCCCAGGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGACACCg < 1:6320279/99‑1 (MQ=18)
aaggccccGCGGCC.AGCCCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCAcc < 2:681902/96‑1 (MQ=255)
aaGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTTCTGCGCCTGGGGGAACGGGCTTGGGACCg > 2:5306511/1‑101 (MQ=17)
aaGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCAccc > 1:9089204/1‑100 (MQ=255)
aGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGGAACGGTCTTGGCACCGc > 2:1114736/1‑101 (MQ=255)
gg.CCCTGGCCC.AGCGCCCGCCCCGCCCATGGG.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGcc < 1:1409951/101‑1 (MQ=255)
gg.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGcc > 2:5952175/1‑101 (MQ=255)
gg.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCCGCTGCGCCCGGGGGAACGGTCTTGGCACCGcc > 1:8508470/1‑101 (MQ=255)
g.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCCGCGCCTGGGGGAACCGTCTTGGCCCCCccc > 1:8956468/1‑101 (MQ=17)
ccccCCGCCC.GGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGccc < 1:4429066/100‑1 (MQ=255)
cccTCGCCC.GGCCCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCg < 1:6924062/101‑1 (MQ=255)
|
TTTTGCGGATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCC.AGCGCCCGCCCCGCCCATGGC.GGGCGC.TTCTCG.CCCGCCGGGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGG > NC_014034/3068055‑3068255
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|