| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,163 | A→T | 2.4% | intergenic (‑146/+146) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,163 | 0 | A→T | 2.4% | 9.4 ‑2.3 ‑0.2 | 296 | intergenic (‑146/+146) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (7/0): ref base (193/95): total (200/96) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.01e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.84e-01 | ||||||||||
Only 100 of 416 total aligned reads displayed.
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGC > NC_014034/3068063‑3068263
|
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCa > 2:7469195/1‑101 (MQ=255)
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCa > 2:7589211/1‑101 (MQ=255)
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCa > 2:8784093/1‑101 (MQ=255)
ttCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTGGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAg < 1:6471193/101‑1 (MQ=255)
ttCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAg < 2:6154395/101‑1 (MQ=255)
ttCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAg < 1:1202424/101‑1 (MQ=255)
ttCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAg < 1:1976826/101‑1 (MQ=255)
tCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAgc < 2:3358585/101‑1 (MQ=255)
cgcgCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAgcg > 2:2085416/1‑101 (MQ=255)
gcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGcgccc < 1:4551721/101‑1 (MQ=255)
gcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGcgccc < 1:2969092/101‑1 (MQ=255)
cAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGcgcccg > 1:3579017/1‑101 (MQ=255)
ccGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCgcccgccc > 1:5407723/1‑101 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGcccgccccg < 1:379662/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGcccgccccg < 1:3264862/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGcccgccccg > 1:7301144/1‑101 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCAt < 2:2807842/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATg > 1:1372665/1‑101 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATg > 2:1733316/1‑101 (MQ=255)
tGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATgg > 1:2093498/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATggc > 1:8148026/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCACggc > 1:1794428/1‑101 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGA.GGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCCTggcg > 2:7228203/1‑101 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATggcg < 1:6625240/101‑1 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATggcg < 2:7129024/101‑1 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATggcggg < 2:4550474/101‑1 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATggcgggg > 1:8739067/1‑100 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATggcgggc > 2:6008639/1‑101 (MQ=255)
gCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGgggc > 1:6298955/1‑101 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ctc > 1:3454767/1‑101 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttct < 1:2238565/101‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttct < 2:3578909/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttctc > 1:2298119/1‑101 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttctc < 1:3014571/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGGCATGCGGAACAGTGGCCCCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttctc < 1:7589535/101‑1 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttctccc > 1:4938790/1‑99 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.Ttctccc > 1:6133416/1‑99 (MQ=255)
gAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTcg.c < 2:2444130/101‑1 (MQ=255)
aGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTcg.cc < 1:3178374/101‑1 (MQ=255)
ggCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTcg.ccc < 1:8013050/101‑1 (MQ=255)
gCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTcg.cccg > 2:5638020/1‑101 (MQ=255)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTcg.cccg.cc < 1:6914692/101‑1 (MQ=255)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTcg.cccc.cc > 1:5711429/1‑101 (MQ=255)
aTCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.Cccg.ccg > 2:57731/1‑101 (MQ=255)
tCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCgg < 2:8397469/101‑1 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGGCCGCCCCG.CCCATGGCGGGGGC.TTCTTG.GCCG.CCGgggcg > 2:4211547/1‑101 (MQ=18)
gAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGgggcgg > 1:8515396/1‑101 (MQ=255)
ggTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGgggcgggg > 2:379554/1‑100 (MQ=255)
gTCATGCGGACCAGAAGTCCCGTGACCGCCGGGGGCCCAAAGG.CCCTCGGCCTGCGCCCGCCCCG.CCATCGGCGGGGGCGCTCGCG.CCCG.CCCggccgggg > 2:3696787/1‑100 (MQ=18)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGGGC.CTCTCG.CCCG.CCCGggcgggcggc > 2:6371486/1‑99 (MQ=255)
cGGAACAGTGGCCTCGTGACGGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGc.c < 1:7202748/101‑1 (MQ=255)
ggAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGc.cc > 1:1696942/1‑100 (MQ=255)
gAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.ctc < 1:1569293/101‑1 (MQ=255)
gagggTGGCCTGGGGCCCGCCGGGGGCCCAAAGG.CCGTGGGCCAGCCCCCGCCCCG.CCCATGGCGGCCGC.TTCTCG.CCCG.CCGGGGGGGGCGCCGGC.ctct < 2:1429650/97‑1 (MQ=11)
aaCAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCCGC.ctcc > 1:7872490/1‑100 (MQ=255)
accgTGGCCTCGGGCCCGCCGAGGGCCCAAAGC.CCCTCGGCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTctg < 2:8916513/98‑1 (MQ=14)
aCAGTGGTCCCATGACCCCCGAGTGCCCCAAGG.CACTCGGGCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCC.CCCGCCCGGGGAGGGGGCCGGc.cccc > 1:5948/1‑98 (MQ=17)
aCAGGGGCCTCGTGCCCGCCGAGGGCCCAAGGG.CCCTCGGCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTctg < 2:5407538/101‑1 (MQ=14)
cggTGGCCTCGGGCCCGCCGGGGGCCAAAAGC.CCCTCGCCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTctgc < 1:6786758/99‑1 (MQ=14)
agaagtcccGTGACCGCCGGGGGCCCAAAGG.CCCTCGGCCTGCGCCCGCCCCG.CCATCGGCGGGCGCGTTCCCG.CCCC.CCGGGGTGCGGGCCGGG.CCctgc > 2:7411924/9‑101 (MQ=14)
aGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCCCCCGCCCCG.CCCATGGCGGGCGC.CTCACT.CCCG.CCGGGGCCGGCGCCGGC.cacttcg > 2:12736/1‑98 (MQ=14)
tGGCCTCGTGCCCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCtgctgc < 1:1059178/101‑1 (MQ=255)
tGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCtgctgc > 1:7459814/1‑101 (MQ=255)
cccGTGACCGCCGAGGGCCCCAAGG.CACTCGCCCAGCGCCCGCCCCG.CCCATGGCGGGCCCTTTCGCC.GCCC.CCGGGGCGGAC.CCGGCGCTctgccctgcc > 2:3248003/3‑95 (MQ=17)
tCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CCCTGCTGCGCCTg > 1:3864218/1‑101 (MQ=255)
cccggcccgcggGGGGCCCAACGG.CCCCCGGCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTg < 1:4003465/95‑1 (MQ=11)
cGTGACCGCCGGGGGCCCAAAGG.CCCTCGGCCTGCGCCCGCCCCG.CCATCGGCGGGCGCGGTTGCC.CCCC.CGGGGGCGGGCGGGGGG.CGCTGCCGCGCCTg > 2:8311405/1‑101 (MQ=2)
gggcccgccgGGGGCCCAAAGG.CCCGCGGCCCGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTggg < 1:5153746/97‑1 (MQ=14)
gTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTggg < 2:3057337/101‑1 (MQ=255)
tgccagccgGGGGCCCAAAGG.CCGCCGGCCAGCGCCCGCCCCG.CCCATGGCGGGGGC.TTCTCGCCCCC.CCCGGCCGGGCGCCGGC.CGC.GGTGCGCCttcgg > 2:3023185/6‑97 (MQ=14)
gACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGGGCCCGC.CCCTGCCGCGCCCggggg > 1:7653507/1‑100 (MQ=14)
aCCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCCggggga > 2:3839797/1‑99 (MQ=255)
ccgccgAGGCCCAAAGGG.CCCTCGCCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGaaa < 2:1966920/101‑1 (MQ=17)
cgccgA.GGCCCAAAGGCCCCCCGGCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAAc < 2:2599252/101‑1 (MQ=14)
gccgGGGGCCCAAAGC.CCCGCGGCCGGCCCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACg < 1:8280545/101‑1 (MQ=14)
gggggCCCAAAGG.CCCCCGGCCAGCGCCCGCCCCGCCCCATGGCGGGCGCGTTCGCG.CCGC.CCGGGGGTGGCGGCGGC.CCCTGTCGCGCCCggggccggtc > 1:7744116/3‑95 (MQ=18)
gggCCGAAAGG.CACACGGGCGGCGCCCGCCCCG.CCAATGGCGGGCGG.TGCGCC.CCCG.CCGGGGGGGCCGGCGGC.CTCTGCTGCGCCTGGGGAAACGGTCtt < 2:1634810/101‑1 (MQ=9)
gggCCAAAGGG.CCCGCGCCCAGCGCCCGCCCCG.CCCAGGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCtt < 1:7016360/101‑1 (MQ=17)
gCCCAAGGC.CCCTGGGCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTgg < 2:7008474/101‑1 (MQ=18)
gCCCAAGGC.CCCCCGCCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAACCGGTCTTgg < 1:8803034/101‑1 (MQ=17)
cccAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGGGGGCGC.TTCTCG.CCCG.CCGGGGCGAGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGc > 1:6573064/1‑101 (MQ=255)
ccAAGGG.CCCTCGCCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCa < 2:7794016/101‑1 (MQ=255)
ccAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGGCTTGGcc > 1:4141436/1‑100 (MQ=255)
ccAAAGC.CCCCCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCa < 2:4628395/101‑1 (MQ=255)
aaGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTTCTGCGCCTGGGGGAACGGGCTTGGGACCg > 2:5306511/1‑101 (MQ=17)
aaGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCg > 2:6716883/1‑101 (MQ=255)
aggccccCCGGCCAGCCCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCg < 2:3151122/97‑1 (MQ=255)
aGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGGAACGGTCTTGGCACCGc > 2:1114736/1‑101 (MQ=255)
g.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCCGCGCCTGGGGGAACCGTCTTGGCCCCCccc > 1:8956468/1‑101 (MQ=17)
g.CCCCCGCCCGGCGCCCGCCCCG.CCCAGGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGccc < 1:3700075/101‑1 (MQ=18)
cccGCGCCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCg < 2:5101711/101‑1 (MQ=255)
cccCCNGCCAGCCCCCGCCCCG.CCCATGGCGGGGGT.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCg < 1:1870847/101‑1 (MQ=18)
ccTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGGAACGGTCTTGGCACCGccccg > 1:291024/1‑99 (MQ=255)
cccGGCCGGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCggg < 1:9131973/99‑1 (MQ=255)
tCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGGAACGGTCTTGGCACCGCCCGGGc > 2:8090717/1‑101 (MQ=255)
gCCGGCGCCCGCCCCG.CCCGTGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTcc < 1:2759559/101‑1 (MQ=255)
ccgaGCCCCCGCCCCG.CCCAGGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTcc < 2:3951803/98‑1 (MQ=255)
ccAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcg > 2:5916693/1‑101 (MQ=255)
aGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCCCcggc > 1:5380447/1‑101 (MQ=255)
aGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGAGCCGGC.CTCTGCTGGGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcggc > 1:2589890/1‑101 (MQ=255)
|
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAAGG.CCCTCGGCCAGCGCCCGCCCCG.CCCATGGCGGGCGC.TTCTCG.CCCG.CCGGGGCGGGCGCCGGC.CTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGGC > NC_014034/3068063‑3068263
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 23 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|