Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	3,333,494	C→G	100%	intergenic (+40/‑126)	ccmH → / → paaG	cytochrome c‑type biogenesis protein CcmH/enoyl‑CoA hydratase

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	3,333,494	0	C→G	100.0%	246.3	66	intergenic (+40/‑126)	ccmH/paaG	cytochrome c‑type biogenesis protein CcmH/enoyl‑CoA hydratase
Reads supporting (aligned to +/- strand):  new base (1/65):  ref base (0/0):  total (1/65)

GGTGCCGGTGCTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGCGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGGCGCCCGCGCG  >  NC_014034/3333397‑3333591                                                                                                   |                                                                                                  ggtgccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCgcc.gggggg                                                                                                >  1:4178844/1‑100 (MQ=255)  gtgccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTTAAAGACCTGCTGAAGGACTAGGGATTTCCCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCt                                                                                               <  1:6745567/101‑1 (MQ=255)  gtgccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCt                                                                                               <  1:5053895/101‑1 (MQ=255)   tgccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTc                                                                                              <  1:5458841/101‑1 (MQ=255)    gccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTcc                                                                                             <  1:6925334/101‑1 (MQ=255)    gccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTcc                                                                                             <  1:8156752/101‑1 (MQ=255)    gccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTcc                                                                                             <  2:4704085/101‑1 (MQ=255)    gccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTcc                                                                                             <  1:2777774/101‑1 (MQ=255)    gccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTcc                                                                                             <  1:226992/101‑1 (MQ=255)     ccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCg                                                                                            <  2:82932/101‑1 (MQ=255)     ccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCg                                                                                            <  2:241880/101‑1 (MQ=255)     ccggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCg                                                                                            <  2:2615334/101‑1 (MQ=255)      cggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCgcc.cgcgggggggc                                                                                           >  2:6122893/1‑95 (MQ=255)      cggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGc                                                                                           <  1:6849059/101‑1 (MQ=255)       ggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGcc                                                                                          <  2:193892/101‑1 (MQ=255)       ggtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGcc                                                                                          <  2:6438861/101‑1 (MQ=255)        gtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGccc                                                                                         <  2:1857832/101‑1 (MQ=255)        gtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGccc                                                                                         <  2:925746/101‑1 (MQ=255)        gtgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGccc                                                                                         <  1:4358093/101‑1 (MQ=255)         tgcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGcccc                                                                                        <  2:5555504/101‑1 (MQ=255)         ggtcccgggCGGAGGAAGGGGGGGGGGAAAAAGCCCTGCGGAAGGACTAGGGTTTTCGCCGGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGcccc                                                                                        <  2:4747736/94‑1 (MQ=19)          gcTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGccccc                                                                                       <  1:7607024/101‑1 (MQ=255)           ctctCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGcccccc                                                                                      <  2:4170428/101‑1 (MQ=255)             ctcGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGc                                                                                    <  2:5024528/101‑1 (MQ=255)               cGGCCGAGGAAGAGGCGCGGCTGAAAGACTTGCTGAAGGACTAGGGATTTCGCGCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAc                                                                                  <  2:8160893/101‑1 (MQ=38)               agccggAGGAAGAGGCGCGGCTGAAAGACCTTCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCCCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAc                                                                                  <  1:2942926/96‑1 (MQ=38)                ggCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAcc                                                                                 <  1:2593476/101‑1 (MQ=255)                 gCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAccc                                                                                <  2:8396153/101‑1 (MQ=255)                 gCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAccc                                                                                <  2:507002/101‑1 (MQ=255)                 gCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAccc                                                                                <  1:5567837/101‑1 (MQ=255)                  ccGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAcccc                                                                               <  1:3469597/101‑1 (MQ=255)                  ccGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAcccc                                                                               <  2:7247178/101‑1 (MQ=255)                   cGAGGAGGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAccccc                                                                              <  2:6163659/101‑1 (MQ=255)                    gAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAcccccc                                                                             <  2:7391881/101‑1 (MQ=255)                    gAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCAcccccc                                                                             <  2:3603196/101‑1 (MQ=255)                      ggAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCgg                                                                           <  1:7676197/101‑1 (MQ=255)                       gAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCGCGAGGGGTCTGCCCCCAGGCCCCCCCgc                                                                           >  1:6643478/1‑100 (MQ=255)                         agagGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGGTCCGCCCCCAGCACCCCCCGGGCg                                                                        >  2:6556149/1‑101 (MQ=255)                          gagGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCC.CC.GGCGGGCACGGCCCCCGCCCCCCCCCGGCggg                                                                      >  1:4009719/1‑99 (MQ=255)                            ggCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTAt                                                                     <  2:2665870/101‑1 (MQ=255)                              cgcgGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTAttt                                                                   <  2:2808392/101‑1 (MQ=255)                                     gAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAg                                                            <  1:5965729/101‑1 (MQ=255)                                       aaGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGa                                                          <  2:1606089/101‑1 (MQ=255)                                        aGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGaa                                                         <  2:6378425/101‑1 (MQ=255)                                         gACCTGCTGAAGGAGTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGCCCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGaaa                                                        <  1:899878/101‑1 (MQ=255)                                         gACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGaaa                                                        <  2:4083225/101‑1 (MQ=255)                                          aCCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGaaaa                                                       <  2:8307058/101‑1 (MQ=255)                                           ccTGCTGAAGGACTAGGGATTCCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAg                                                      <  2:3514714/101‑1 (MQ=255)                                                    ggACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCt                                             <  1:2705180/101‑1 (MQ=255)                                                     gACTAGGGATTTCGCCCGGGGCTGGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTg                                            <  1:3487216/101‑1 (MQ=255)                                                      gcTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGTCCCGCG.GGGGGCTCCGCCCCCCGCCCCCCCCGGGCGTATTTTGCCAAGGTAAAGCGGGGTTCTgg                                           <  1:8843070/100‑1 (MQ=25)                                                           ggttttCGCCCGGGGCTGGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTg                                      <  2:7245803/98‑1 (MQ=255)                                                             aTTTCGCCCGGGGCTGGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGAc                                    <  1:7240806/101‑1 (MQ=255)                                                              tttCGCCCGGGGCTGGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACg                                   <  2:7074461/101‑1 (MQ=255)                                                              tttCGCCCGGGGCTGGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACg                                   <  2:1412167/101‑1 (MQ=255)                                                                 cGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGttt                                <  2:3502678/101‑1 (MQ=255)                                                                 cGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGttt                                <  1:371039/101‑1 (MQ=255)                                                                   cccGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTgg                              <  1:6713544/101‑1 (MQ=255)                                                                    ccGGGGCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGt                             <  2:7851378/101‑1 (MQ=255)                                                                        ggCTTGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCg                         <  2:3329966/101‑1 (MQ=255)                                                                           ttGCGCCCCGGGCGCCCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCtt                      <  1:226815/101‑1 (MQ=255)                                                                            tGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCttt                     <  2:765297/101‑1 (MQ=255)                                                                            tGCGCCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCttt                     <  2:6934334/101‑1 (MQ=255)                                                                             gcgcCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCGAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTg                    <  1:1336060/101‑1 (MQ=255)                                                                             gccccccGGTCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTg                    <  2:6643218/98‑1 (MQ=255)                                                                              cgcCCCGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGc                   <  1:9143622/101‑1 (MQ=255)                                                                                 cccGGGCGGCCCGCG.GGGGGTTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCtt                <  1:7209453/101‑1 (MQ=255)                                                                                   cGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTc              <  1:5686014/101‑1 (MQ=255)                                                                                   cGGGCGACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTc              <  2:3418554/101‑1 (MQ=255)                                                                                      ctgACCCGCG.GGGGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGgc           <  1:5363195/99‑1 (MQ=255)                                                                                               g.gggggCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGGCGCCcgcgcg  >  1:7144003/1‑101 (MQ=255)                                                                                               g.gggggCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGGCGCCcgcgcg  >  1:7774358/1‑101 (MQ=255)                                                                                               g.gggggCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGGCGCCcgcgcg  >  2:1085921/1‑101 (MQ=255)                                                                                               g.gggggCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGGCGCCcgcgcg  >  1:2179982/1‑101 (MQ=255)                                                                                               g.gggggCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGGCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGTTGCCcgcgcg  >  2:911206/1‑101 (MQ=25)                                                                                                   |                                                                                                  GGTGCCGGTGCTCTCGGCCGAGGAAGAGGCGCGGCTGAAAGACCTGCTGAAGGACTAGGGATTTCGCCCGGGGCTTGCGCCCCGGGCGACCCGCG.GGCGGCTCCGCCCCCCGCACCCCCCGGGCGTATTTTGCCAAGGAAAAGCGGGGGTCTGGTCGTGACGTTTGGTTTCGCTTTGCCTTTCGGCGCCCGCGCG  >  NC_014034/3333397‑3333591 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG