Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	974,303	1	.→G	100.0%	1.9	4	intergenic (+183/+76)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/2):  ref base (1/0):  total (2/2)

CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCT  >  NC_014034/974204‑974379                                                                                                      |                                                                                tctcGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccc                                                                                  <  2:2917524/98‑1 (MQ=255)  cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.g                                                                                >  1:2736461/1‑101 (MQ=255)  cccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGAACAATATCCC.g                                                                                >  2:3333897/1‑101 (MQ=38)   ccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATccccg                                                                                >  2:4447121/1‑99 (MQ=255)   ccGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCAGGATCCGGCATGGCCGCTGAGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gg                                                                               >  1:4950761/1‑101 (MQ=38)    cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTGCGACAAATATcccaga                                                                               >  1:2917691/1‑98 (MQ=38)    cGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.ggg                                                                              <  1:42776/101‑1 (MQ=255)     ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.cggg                                                                             >  1:3521654/1‑101 (MQ=255)     ggACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAAAATCCC.gggg                                                                             >  2:4022209/1‑101 (MQ=255)        ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTTACCTTTCGGCAAATATCCC.ggggggc                                                                          >  1:5112570/1‑98 (MQ=38)        ccccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtc                                                                          >  2:1779418/1‑98 (MQ=255)         cccccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtcc                                                                         <  1:5580254/101‑5 (MQ=255)           cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgg                                                                       <  1:1783365/101‑7 (MQ=39)           cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgg                                                                       <  1:3857296/101‑7 (MQ=39)           cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccgg                                                                       <  2:2387074/101‑7 (MQ=39)           cccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGG...GTGCg.g                                                                   >  2:5365681/1‑101 (MQ=255)            ccAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccggg                                                                      >  1:1660081/1‑94 (MQ=38)             cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTTCGACAAAAATCCC.cggggtccgggg                                                                     >  1:1437269/1‑93 (MQ=255)             cAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGGCAAATATCCC.gcggggccgggg                                                                     >  2:4624569/1‑93 (MQ=255)              aGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.gggggtccggggg                                                                    <  1:5698909/101‑10 (MQ=38)                                             cgggATCCGGCATGGCCGCTGCGCAGGGGCTTGTTTTCACCTTGCGACAAATACCCCGGGGGTCGGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAg                                      <  1:1807502/101‑1 (MQ=9)                                                                  cgcAGCGGCTTGTTTTCCCCGTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCcggcc                 <  2:3714322/101‑1 (MQ=2)                                                                                 tCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGGGGGGCGCGGCGGCGGGCCAGGCGGAAAACCCCCGCCGCAGCGGcgcgggct  >  2:1952969/1‑94 (MQ=0)                                                                                                      |                                                                                CCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCC.GGGGT..GTGCG.GAAGCCCCCGGCGGGTCGCCTCGGCGACAGCCGAGGCGAAATACCCCCGCCGCAACGGCCGGTTCT  >  NC_014034/974204‑974379 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG