Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,607,985	Δ1 bp	100%	intergenic (+255/‑92)	RCAP_rcc01484 → / → murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,607,985	0	T→.	100.0%	310.1	73	intergenic (+255/‑92)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
Reads supporting (aligned to +/- strand):  new base (25/48):  ref base (0/0):  total (25/48)

CCCTCAAGGATGGCGGCGGCCCGGGGAATGCGGGCGAGACCGGGCCGGACCGGCGCCTGTCTTCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGA  >  NC_014034/1607881‑1608068                                                                                                         |                                                                                     cccTCAAGGATGGCGGCGGCCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCt                                                                                      <  1:1288737/101‑1 (MQ=255)  ccTCAAGGATGCCGGCGGCCC.GGGAATGCGGGC.AGACCGGG.CGGGCCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCtg                                                                                     <  1:3231825/101‑2 (MQ=255)   cTCAAGGATGGCGGCGGCCC.GGGAATGCGGGC.AGCCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCtgc                                                                                    <  1:2426758/101‑3 (MQ=255)   cTCAAGGATGGCGGCGGCCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCtgc                                                                                    <  2:1767726/101‑3 (MQ=255)   cTCAAGGATGGCGGCGGCCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCtgc                                                                                    >  2:988675/1‑99 (MQ=255)    tCAAGGATGGCGGCGGCCC.GGGAATGCGGGCG.GACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCtgcg                                                                                   <  1:157541/101‑4 (MQ=255)     cAAGGATGGCGGCGGCCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCtgcgg                                                                                  >  2:3847527/1‑97 (MQ=255)        ggAGGGCGGCGGCCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGgcgc                                                                              <  1:80805/101‑1 (MQ=255)         gATGGCGGCGGCCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGcgcc                                                                             <  1:3984084/101‑1 (MQ=255)            ggcggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCgccgcc                                                                          >  1:1267746/1‑101 (MQ=255)             gcggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGccc                                                                         <  1:2224571/101‑1 (MQ=255)              gggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCg                                                                        <  2:1963808/100‑1 (MQ=255)              gggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCg                                                                        <  1:333599/100‑1 (MQ=255)              cggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCg                                                                        <  2:3420050/101‑1 (MQ=255)               ggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.a                                                                      <  1:655941/101‑1 (MQ=255)               ggcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.a                                                                      >  1:3775511/1‑101 (MQ=255)                gcggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.aa                                                                     >  2:3707763/1‑101 (MQ=255)                  ggcCC.GGGAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.ACAg                                                                   >  2:3003848/1‑101 (MQ=255)                     cccgggAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAggg                                                                 <  1:2959051/98‑1 (MQ=255)                      ccgggCATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCCACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAgggg                                                                >  2:723611/3‑101 (MQ=255)                      ccgggAAGGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAgggg                                                                <  2:3936072/99‑1 (MQ=255)                       cgggAATGCGGGC.AGCCCGGGCC.CACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAggggg                                                               <  1:418410/100‑1 (MQ=255)                       cgggAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAGagggg                                                               >  2:3977831/2‑101 (MQ=255)                       cgggAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAggggg                                                               <  2:489757/100‑1 (MQ=255)                       cgggAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAggggg                                                               >  1:549348/2‑101 (MQ=255)                       cgggAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAgcggg                                                               >  2:1307088/2‑101 (MQ=255)                        gggAATGCGGGC.AGCCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAgggggg                                                              <  2:752124/101‑1 (MQ=255)                        gggAATGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGACTGCGACGCC.TGCGGCGCCGCCCG.AAAgggggg                                                              >  1:3646819/1‑101 (MQ=255)                        ggaattGCGGGC.AGCCCGGG.CGGACCGCCGCCTGTC.TCCGGCCTTTTCCCAGCGGCTCCCGCGACGGGGTGCGCCGCC.TGCGGCGCCGCCCG.AAAgggggg                                                              <  2:3775254/96‑1 (MQ=255)                            aTGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTgc                                                          >  2:2653209/1‑101 (MQ=255)                            aTGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTgc                                                          >  2:572512/1‑101 (MQ=255)                            aTGCGGGC.AGACCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTgc                                                          <  1:1004141/101‑1 (MQ=255)                                cgggcagaCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTgcgcg                                                       <  2:1976636/96‑1 (MQ=255)                                cgggcagaCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCGgcgcg                                                       >  2:253758/6‑101 (MQ=255)                                    cagcccGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGcccc                                                   <  2:3216877/97‑1 (MQ=255)                                    cagaCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGcccc                                                   <  1:2134308/100‑1 (MQ=255)                                     agaCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGccccc                                                  <  2:3873997/101‑1 (MQ=255)                                       aCCGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGccccccc                                                >  2:2354490/1‑100 (MQ=255)                                        ccGGGCC.GCCCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCctc                                               <  2:679940/101‑1 (MQ=255)                                        ccGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCctc                                               >  1:4016919/1‑101 (MQ=255)                                         cGGGCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCctct                                              <  2:3786267/101‑1 (MQ=255)                                          gggCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCtt                                             >  2:1149250/1‑101 (MQ=255)                                          gggCC.GACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCCCtt                                             >  1:2334439/1‑101 (MQ=255)                                            ggccgacccccgcCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTg                                            <  2:2233483/91‑1 (MQ=255)                                            ggccgACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGCGCGACGCC.TGCGGCGCCGCCCG.CAGCAGCGGCAGCGCGccccccccccc                                            >  2:1467115/5‑96 (MQ=255)                                                gcccGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTcc                                        <  2:3995708/99‑1 (MQ=38)                                                gcccGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTcc                                        <  1:1655572/99‑1 (MQ=38)                                                gACCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTcc                                        >  2:2903541/1‑101 (MQ=38)                                                 aCCGCCGCCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCGGCGCCACCCCCCCTTggttcg                                       >  1:1866039/1‑97 (MQ=255)                                                    gccgcCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCcgctg                                    <  2:3354675/99‑3 (MQ=38)                                                    gccgcCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCcgctg                                    <  2:417877/99‑3 (MQ=38)                                                      cgcCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCcgctggc                                  <  2:3878939/101‑5 (MQ=38)                                                      cgcCTGTC.TCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCcgctggc                                  <  1:2506351/101‑5 (MQ=38)                                                            gtctCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCGAAAAGGGGGGCTGCGCGCCCCCCCCTT.GCCCCcccggcgcgg                             >  1:837581/4‑101 (MQ=255)                                                             tctCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCgc.tggcgcggcc                           <  1:779051/99‑3 (MQ=38)                                                              ctCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGCGGCcc                          >  1:368559/2‑101 (MQ=38)                                                              ctCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGCGGCcc                          <  2:2466092/100‑1 (MQ=38)                                                              ctCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGCGGCcc                          >  1:4203524/2‑101 (MQ=38)                                                               tCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGCGGCcca                         <  2:558129/101‑2 (MQ=38)                                                                 cGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAAt                      <  1:2243143/101‑1 (MQ=37)                                                                 cGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCCTGGTCCGC.TGGCGC.GGCCCAAt                      >  2:1782260/1‑101 (MQ=255)                                                                  gACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAAtt                     <  2:11731/101‑1 (MQ=37)                                                                  gACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAAtt                     <  1:1061500/101‑1 (MQ=37)                                                                    ccTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCa                   <  1:828935/101‑1 (MQ=37)                                                                       tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccc                <  2:2724014/101‑1 (MQ=38)                                                                       tttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccc                <  1:3708017/101‑1 (MQ=37)                                                                        ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc               >  2:3088370/1‑101 (MQ=38)                                                                        ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc               <  1:677789/101‑1 (MQ=37)                                                                        ttCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAcccc               <  1:959689/101‑1 (MQ=38)                                                                         tCCCAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCAccccc              <  1:3004073/101‑1 (MQ=38)                                                                          cccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCg             <  2:159319/101‑1 (MQ=38)                                                                           ccAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGc            <  1:1880069/101‑1 (MQ=38)                                                                            cAGCGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcg           >  1:1497020/1‑100 (MQ=38)                                                                             aGCGGATCCCGCGACGGGGTGCGACGCC.TGCAGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgg          <  1:4066694/101‑3 (MQ=37)                                                                               cGGATCCCGCGACGGGGTGCGGCGCC.TGCGGCCCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggga        <  1:2791024/101‑5 (MQ=25)                                                                               cGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcggga        >  2:1869800/1‑97 (MQ=37)                                                                               cGGATCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATCCACCCCCGcggga        >  2:1133022/1‑97 (MQ=37)                                                                                agATCTCGAGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGC.CCGGCCCAATCCACCCCCGcgggat       <  2:3422457/100‑6 (MQ=19)                                                                                  gtCCCGCGGCGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat     <  1:4066160/100‑8 (MQ=25)                                                                                  aTCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatat     <  1:10768/101‑8 (MQ=37)                                                                                   tCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatt    <  1:1048526/101‑9 (MQ=37)                                                                                   tCCCGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatt    <  1:4175435/101‑9 (MQ=37)                                                                                     ccGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatttc  <  2:439932/101‑11 (MQ=25)                                                                                     ccGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatttc  <  1:2662624/101‑11 (MQ=25)                                                                                     ccGCGACGGGGTGCGACGCC.TGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGTCCGC.TGGCGC.GGCCCAATTCACCCCCGcgggatatttc  <  2:3109789/101‑11 (MQ=25)                                                                                                         |                                                                                     CCCTCAAGGATGGCGGCGGCCCGGGGAATGCGGGCGAGACCGGGCCGGACCGGCGCCTGTCTTCCGACCTTTTCCCAGCGGATCCCGCGACGGGGTGCGACGCCTTGCGGCGCCGCCCG.AAAGGGGGGCTGCGCGCCCCCCTCTTGGGCCGCGCGGCGCGGGCCCAATTCACCCCCGCAGCTTACGGA  >  NC_014034/1607881‑1608068 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG