| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,303,931 | +CA | 100% | intergenic (+118/+39) | urtE → / ← RCAP_rcc01231 | urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,303,931 | 1 | .→C | 100.0% | 152.5 | 75 | intergenic (+118/+39) | urtE/RCAP_rcc01231 | urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
| Reads supporting (aligned to +/- strand): new base (51/24): ref base (0/0): total (51/24) | ||||||||||
| * | NC_014034 | 1,303,931 | 2 | .→A | 100.0% | 154.3 | 75 | intergenic (+118/+39) | urtE/RCAP_rcc01231 | urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
| Reads supporting (aligned to +/- strand): new base (51/24): ref base (0/0): total (51/24) | ||||||||||
TTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC....GCCAAGA..TGGGGG..GC.CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGC > NC_014034/1303857‑1303994
||
ttGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGgggcgg > 2:3852948/1‑101 (MQ=14)
tGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGgggcggg > 1:3730453/1‑101 (MQ=14)
tGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGgggcggg > 2:289724/1‑101 (MQ=14)
ggCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccg > 2:1897536/1‑101 (MQ=14)
ggCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccg < 2:181274/101‑1 (MQ=14)
gCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgc > 1:1758879/1‑101 (MQ=14)
cAAGATAACCCCCACCCTTTCCCCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgca < 2:3598580/101‑1 (MQ=2)
cAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGCGAATTGGCCGAAGGCCAAGAGGGGGGGG..GCGCCCCCTTTTCGGGGCgggccgcc > 1:1236477/1‑100 (MQ=12)
cAAAATAAACCCCATCTTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgca < 2:1618899/101‑1 (MQ=9)
aaGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcag > 2:902827/1‑101 (MQ=14)
aGATAACCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagg < 2:1022336/101‑1 (MQ=9)
aGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagg > 2:720527/1‑101 (MQ=14)
gATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcaggg > 1:1561472/1‑101 (MQ=14)
aTAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggc > 2:4096517/1‑101 (MQ=14)
aTAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGCGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccccagggc > 1:729885/1‑101 (MQ=9)
tAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggcc > 2:337291/1‑101 (MQ=14)
tAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggcc > 1:3121861/1‑101 (MQ=14)
aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggccg > 1:277369/1‑101 (MQ=14)
aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggccg > 2:1183999/1‑101 (MQ=14)
aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggccg > 2:2755943/1‑101 (MQ=14)
aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgcgccgcgggtata > 1:4148002/1‑97 (MQ=2)
aaaCCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCgggccgcagggccg > 1:2515029/1‑101 (MQ=9)
ccccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCAc > 1:495094/1‑101 (MQ=14)
ccccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCAc > 1:343098/1‑101 (MQ=14)
ccATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCAccc > 1:1041489/1‑101 (MQ=14)
cATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCCCCCt > 2:1950147/1‑101 (MQ=9)
cATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCt > 1:1875246/1‑101 (MQ=14)
aTCCTTTCCCCTTGCCGCAAATGTCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTg < 1:3391972/101‑1 (MQ=9)
aTCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTg < 2:873801/101‑1 (MQ=14)
ccTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTgcc > 2:955140/1‑99 (MQ=9)
ccTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTc < 2:1782451/101‑1 (MQ=14)
cTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCa > 2:2574388/1‑101 (MQ=14)
tttCACCTTGCCGCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAg > 2:569413/1‑101 (MQ=9)
ttCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAgc > 2:2953048/1‑101 (MQ=14)
ttCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAgc > 1:2336722/1‑101 (MQ=14)
tccccTGGCCGCAATTACCCGGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcg < 2:2937855/98‑1 (MQ=9)
tCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcg < 2:1052266/101‑1 (MQ=14)
tCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcg > 2:3761273/1‑101 (MQ=14)
cACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAgcgc > 2:1374795/1‑101 (MQ=17)
cccTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCa < 1:2571444/100‑1 (MQ=9)
aCCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCa > 1:2482617/1‑101 (MQ=17)
aCCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCa > 1:57595/1‑101 (MQ=17)
cTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATc < 1:3414684/101‑1 (MQ=17)
ttGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATcc > 2:2489452/1‑101 (MQ=17)
ttGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGACGCAGGGCCGGCCCCCGTCAGAGCATcc > 2:2440748/1‑101 (MQ=2)
tGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATccc < 2:230960/101‑1 (MQ=17)
gcagCAAATCTCCGGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATcccc < 1:1475190/98‑1 (MQ=12)
gCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATcccc < 2:3332587/101‑1 (MQ=17)
gCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATcccc > 2:2414289/1‑101 (MQ=17)
cGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa < 2:1622509/101‑1 (MQ=17)
cGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa < 1:703689/101‑1 (MQ=17)
cGCAAATACCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCaa < 2:971688/101‑1 (MQ=12)
gCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAg > 2:2601793/1‑101 (MQ=17)
gCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAg < 1:1930832/101‑1 (MQ=17)
gCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAg > 1:2614464/1‑101 (MQ=17)
gCAAATATCCCGGGGGGGGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGAAGGGCCGCACCCTGTCAGCGCACccccgcg > 1:4057937/1‑98 (MQ=9)
cAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgc > 1:2849983/1‑101 (MQ=17)
cAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgc > 2:629049/1‑101 (MQ=17)
aaaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcc > 2:1635754/1‑101 (MQ=17)
aaaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcc > 2:1561851/1‑101 (MQ=17)
aaaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcc > 1:2051878/1‑101 (MQ=17)
aaTATCCGGGGGGGTGAAGTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgccc < 2:4119840/101‑1 (MQ=12)
aaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgccc < 1:26126/101‑1 (MQ=17)
aaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgccc > 2:1065187/1‑101 (MQ=17)
aaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgccc > 2:1159689/1‑101 (MQ=17)
aaTATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgccc < 2:1695344/101‑1 (MQ=17)
atatCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccg > 2:3302172/1‑101 (MQ=17)
tatCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgc > 2:282599/1‑101 (MQ=18)
tatCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgc < 2:438978/101‑1 (MQ=18)
ccccgggggggTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc < 1:2944731/96‑1 (MQ=12)
atCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc > 2:614280/1‑101 (MQ=18)
atCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc > 2:3571587/1‑101 (MQ=18)
atCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc > 1:508911/1‑101 (MQ=18)
atCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcc > 2:1217831/1‑101 (MQ=18)
tCCCGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgccc > 2:777840/1‑101 (MQ=18)
cccGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAgcccgcccc > 1:2686425/1‑100 (MQ=12)
cccGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGcccgcccg > 1:1811778/1‑101 (MQ=18)
ccGGGGGGTGAATTGGCCGAAGGCCAAGA..GGGGGGCAGCGCCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCccgcccgc < 1:3236409/101‑1 (MQ=18)
||
TTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC....GCCAAGA..TGGGGG..GC.CCCCCTTTTCGGGGCGGGCCGCAGGGCCGCACCCTGTCAGCGCATCCCCAAGCCCGCCCGC > NC_014034/1303857‑1303994
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|