BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	1,396,946	+A	6.0%	coding (828/1578 nt)	RCAP_rcc01307 →	hypothetical protein

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	1,396,946	1	.→A	6.0%	60.1 ‑0.5 ‑0.1	283	coding (828/1578 nt)	RCAP_rcc01307	hypothetical protein
Reads supporting (aligned to +/- strand): new base (7/10): ref base (128/138): total (135/148)
Fisher's exact test strand distribution p-value = 6.25e-01
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.27e-01

Only 100 of 305 total aligned reads displayed.


CCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCG  >  NC_014034/1396846‑1397046


     ggggCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.t                                                                                                      <  1:1993735/101‑1 (MQ=255)


         cGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGc                                                                                                  >  1:1340677/1‑101 (MQ=255)


         cGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGc                                                                                                  <  1:1495139/101‑1 (MQ=255)


          gTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCt                                                                                                 >  1:3098189/1‑101 (MQ=255)


          gTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCt                                                                                                 >  2:3125390/1‑101 (MQ=255)


          gTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCt                                                                                                 >  1:4043265/1‑101 (MQ=255)


              aTCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.Tccc                                                                                            >  1:1108784/1‑100 (MQ=255)


               tCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GG.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGc                                                                                           >  2:3372974/1‑101 (MQ=255)


                cGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGc.c                                                                                         <  2:2861881/101‑1 (MQ=255)


                 gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.Ct                                                                                        <  2:746177/101‑1 (MQ=255)


                 gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.Ct                                                                                        <  1:1369072/101‑1 (MQ=255)


                 gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.Ct                                                                                        <  2:1847080/101‑1 (MQ=255)


                 gAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.Ct                                                                                        <  1:3280969/101‑1 (MQ=255)


                   aaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..c                                                                                    <  2:2637928/101‑1 (MQ=255)


                   aaCCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..c                                                                                    <  2:2734588/101‑1 (MQ=255)


                       ggTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CCG..CGTg.g                                                                               >  1:2891896/1‑101 (MQ=255)


                         gccAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTc                                                                             <  1:981186/100‑1 (MQ=255)


                           cAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGc                                                                           >  2:417198/1‑101 (MQ=255)


                                aTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GGCGCTcccc                                                                      >  2:3944976/1‑101 (MQ=255)


                                aTAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GGCGCTcccc                                                                      >  2:3204558/1‑101 (MQ=255)


                                 tAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTccccc                                                                     >  1:1797242/1‑101 (MQ=255)


                                 tAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTccccc                                                                     >  1:2162195/1‑101 (MQ=255)


                                  aGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTcccccc                                                                    <  2:4043004/101‑1 (MQ=255)


                                  aGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTcccccc                                                                    <  1:2825086/101‑1 (MQ=255)


                                      cgcgcgGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCgg                                                                <  1:1909163/101‑1 (MQ=255)


                                       gcgcgGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCggg                                                               >  2:2183098/1‑101 (MQ=255)


                                           ggACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCg                                                           >  1:4180781/1‑101 (MQ=255)


                                           ggACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCg                                                           >  2:3419439/1‑101 (MQ=255)


                                           ggACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCg                                                           <  1:1080464/101‑1 (MQ=255)


                                           ggACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCg                                                           >  2:950168/1‑101 (MQ=255)


                                             aCCTCCTCCGCCGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTg                                                         <  2:432769/101‑1 (MQ=255)


                                               tcgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTgg                                                        <  1:58498/92‑1 (MQ=0)


                                               tcgcggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTgg                                                        <  2:2948618/92‑1 (MQ=0)


                                               ctcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                       <  2:281490/101‑1 (MQ=255)


                                               ctcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGa                                                       <  1:2127599/101‑1 (MQ=255)


                                                ttggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                      >  1:4226500/10‑101 (MQ=2)


                                                ttggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                      <  1:777828/92‑1 (MQ=2)


                                                tcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                      >  2:1578004/1‑101 (MQ=255)


                                                tcctcAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGAt                                                      >  1:1018959/1‑101 (MQ=255)


                                                 tggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                     <  1:2628118/93‑1 (MQ=2)


                                                 tggccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                     <  1:875586/93‑1 (MQ=2)


                                                 acccgcccGTCGCTCCCCCCGCGGGGGCGTAGATCGAAACT.GC.GT.G.CG.CG.CCATGAATTCATCG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTgg                                                        >  1:3769715/8‑101 (MQ=0)


                                                  caacactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATc                                                     <  2:2465886/94‑1 (MQ=9)


                                                   ggttgcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                    <  1:521938/96‑1 (MQ=2)


                                                   ggttgcGTCGCTCCACCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCg                                                    <  2:1072222/96‑1 (MQ=2)


                                                   aacactgTCGCTCCCCCCGCGGGGGGGTGGATCGAAAC..GC.GG.G.CC.CGCGC.CGCG.CCGGATCTTTGT.CGG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGAttg                                                    >  1:4135029/7‑99 (MQ=2)


                                                    gttgcGTCGCCCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                   <  1:4090654/97‑1 (MQ=2)


                                                    ccccggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                  >  2:1141088/6‑101 (MQ=2)


                                                    cAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaa                                                  >  1:3035506/1‑101 (MQ=255)


                                                    acactggcGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CGCCC.GC.CGCG.CCAGATCTTTGT.CTG..GGCG.GGGGCTCCCCCCGCGGGGGCGTGCATCGa                                                   <  2:1965481/94‑1 (MQ=2)


                                                    acactgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGa                                                   >  2:3598272/6‑101 (MQ=9)


                                                     aGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGaaa                                                 >  2:1681531/1‑101 (MQ=255)


                                                       gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                <  1:3900838/100‑1 (MQ=2)


                                                       gcGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                <  2:2561397/100‑1 (MQ=2)


                                                       cggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                               <  2:594928/99‑2 (MQ=2)


                                                       cggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGGGGATCGAAAct                                               >  2:1225835/3‑100 (MQ=2)


                                                        tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                               <  2:2383205/100‑2 (MQ=9)


                                                        tgTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAct                                               >  1:1676223/2‑100 (MQ=9)


                                                         gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GC.GT.G.CG.CG.CCATGAATTCATCG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAAc                                                >  2:1369533/1‑101 (MQ=2)


                                                         gTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATc                                             <  2:3711751/101‑1 (MQ=255)


                                                          tCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCa                                            <  1:363515/101‑1 (MQ=255)


                                                          tCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGCGGATCGAAACATCa                                            >  2:1906603/1‑101 (MQ=255)


                                                          tCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActaca                                            <  1:7030/101‑5 (MQ=2)


                                                          tCGCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActaca                                            <  1:2235987/101‑5 (MQ=2)


                                                           cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GC.GT.G.CG.CG.CCATGAATTCATCG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                              <  2:96623/101‑2 (MQ=2)


                                                           cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GC.GT.G.CG.CG.CCATGAATTCATCG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACac                                              >  2:1426685/1‑100 (MQ=2)


                                                           cGCTCCCCCCGCGGGGGCGTGGATCGAAACT.GC.GT.G.CG.CG.CCATGAATTCATCG.AGCGC.CAT..CGAGCGTCGCTCACCCCGCGGGGGCGCGGATCGAAACac                                              >  2:3513049/1‑100 (MQ=2)


                                                           cGCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgc                                            >  2:3472945/1‑97 (MQ=2)


                                                           cGCCCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAg                                           <  2:3315692/101‑1 (MQ=255)


                                                            gCTCCCCCCGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgcc                                           >  2:3732868/1‑96 (MQ=2)


                                                            gCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacacc                                          >  2:1309375/1‑95 (MQ=2)


                                                            gCTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCAGCGGGGGCGTGGATCGAAActacacc                                          >  1:3552116/1‑95 (MQ=2)


                                                             cTCCCCCCGCGGGGGCGTGGATCGAAACT.GC.GT.G.GG.CG.GCATGGATTCATCA.ACCGC.CAT..CGAGCGTCCCTCCCCCCGCGGGGGCGTGGGACGaaaaacca                                            >  2:2610838/1‑96 (MQ=2)


                                                             cTCCCCCCGCGGGGGCGTGGATCGAAACA.CCAAT.GCCG.AA.GC.CAAG.GCCGCA.GCAGC.GGC..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGAACGAAACaaaaa                                           >  1:1778079/1‑97 (MQ=2)


                                                             cTCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacaccg                                         <  2:1634861/101‑8 (MQ=2)


                                                              tCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtc                                        >  1:1948322/1‑101 (MQ=255)


                                                              tCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtc                                        >  1:1045238/1‑101 (MQ=255)


                                                              tCCCCCCGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacaccgg                                        <  2:658004/101‑9 (MQ=2)


                                                              tCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcct                                         >  1:3196182/1‑94 (MQ=9)


                                                              tCCCCCCGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcct                                         >  1:3920103/1‑94 (MQ=9)


                                                              cccccccGCGGGGGCGTGGATCGAAACA..A.CT.G.AC.C...C.GGCA.ACGGCC.TATGCGCTGGACGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActacaccgg                                        <  2:1102975/100‑9 (MQ=2)


                                                              cccccccGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcct                                         <  1:1246585/100‑8 (MQ=9)


                                                               ccccccGCGGGGGCGTGGATCGAAACT.GC.GT.G.CG.CG.CCATGAATTCATCG.AGCGC.CAT..CGAGCGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACCaat                                          >  1:1720171/1‑99 (MQ=2)


                                                               ccccccGCGGGGGCGTGGATCGAAACATGG.CTAT.GG.CG.GC.AGTG.TCAGGT.T.TTC.CAG..CGGC.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAcccgccacg                                        >  1:658081/1‑93 (MQ=0)


                                                               ccccccGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctc                                        <  1:1551679/101‑9 (MQ=9)


                                                                cccccGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAActcggcctcg                                       <  2:798709/101‑10 (MQ=9)


                                                                 ccccGCGGGGGCGTGGATCGAAAC..GC.TG.G.CG.CGCGC.CGCG.CCGGATCTTTGT.CTG..CGCG.GTCGCTCCCCCCGCGGGGGCGCGGATCGAAActcggcctcga                                      >  2:471760/1‑91 (MQ=2)


                                                                  cccGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCtcgtcg                                    <  1:351593/101‑1 (MQ=255)


                                                                    cgcgGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGCTCGAAACATCAGCTCGTCGtt                                  <  1:2400420/101‑1 (MQ=255)


                                                                    cgcgGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGtt                                  <  2:2427774/101‑1 (MQ=255)


                                                                     gcgGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGTCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTg                                 <  2:206652/101‑1 (MQ=255)


                                                                         gggCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCa                             >  2:3068961/1‑101 (MQ=255)


                                                                           gCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGc                           <  2:1797123/101‑1 (MQ=255)


                                                                                gagcGAAACA.TC.CT.G.CG.CG.GC.CGCA.TCTGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGAc                      <  1:3373219/98‑1 (MQ=255)


                                                                                 aTCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACg                     <  2:3891940/101‑1 (MQ=255)


                                                                                    gAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCTCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTCGTCAGCCGGACGATg                  >  1:476185/1‑101 (MQ=255)


                                                                                        cA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCg              <  1:3945236/101‑1 (MQ=255)


                                                                                              cT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGGTGTCCGTCGc          >  1:3720226/1‑101 (MQ=255)


                                                                                               t.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCt         <  2:3257704/101‑1 (MQ=255)


                                                                                                          c.cGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCcg  >  1:2729697/1‑101 (MQ=255)


CCGCGGGGGCGTGGATCGAAACCGGTCCAGAGATAGACCGCGCGGACCTCCTCAGACGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACA.GC.CT.G.CG.CG.GC.CGCA.TCGGCT.TCCGC.CTG..CGTG.GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACATCAGCTCGTCGTTGGTCAGCCGGACGATGTCCGTCGCTCCCCCCG  >  NC_014034/1396846‑1397046

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 24 ≤


ATCG

< 33 ≤


ATCG

< 39 ≤


ATCG