| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,701,433 | +GGGCTTC | 100% | intergenic (+10/+39) | grpE → / ← mutS | GrpE protein/DNA mismatch repair protein MutS |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,701,433 | 1 | .→G | 100.0% | 108.8 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 2 | .→G | 100.0% | 103.5 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/39): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 3 | .→G | 100.0% | 108.2 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 4 | .→C | 100.0% | 106.2 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 5 | .→T | 100.0% | 108.0 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 6 | .→T | 100.0% | 107.3 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
| * | NC_014034 | 3,701,433 | 7 | .→C | 100.0% | 106.8 | 40 | intergenic (+10/+39) | grpE/mutS | GrpE protein/DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): new base (0/40): ref base (0/0): total (0/40) | ||||||||||
CATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......GCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAG > NC_014034/3701333‑3701504
|||||||
catcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAACGCCTGAGGCAGGCCgg < 1:3696702/101‑1 (MQ=255)
tcatTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gg < 1:2155682/101‑2 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGGCgg.......gggg > 1:2819396/1‑98 (MQ=255)
atTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc < 2:499485/101‑4 (MQ=255)
atTCAAGTGATGGACGACGTCTTGCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggc < 2:1282283/101‑4 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:2773174/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 2:1841542/101‑7 (MQ=255)
cAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttc < 1:312518/101‑7 (MQ=255)
aGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcg < 2:2358971/101‑8 (MQ=255)
aGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcg < 2:2327365/101‑8 (MQ=255)
aGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcg < 2:232205/101‑8 (MQ=255)
gTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCgg.......gggcttcgcc < 1:3066262/101‑10 (MQ=255)
ctgcACGGCTGTCGGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATAtttt < 2:1176332/101‑1 (MQ=16)
gcACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCa < 2:2184899/101‑1 (MQ=21)
cACGACCGTGTGCTACGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAg < 2:905871/101‑1 (MQ=18)
cACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAg < 1:781147/101‑1 (MQ=21)
aCGACCGGCTGCTGCGTCCGGCGAAAGGCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGc < 1:1983842/101‑1 (MQ=18)
gcccGTATGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCaa < 2:3714847/99‑1 (MQ=18)
aCCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAg < 1:4143027/101‑1 (MQ=21)
cGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGAt < 1:2732673/101‑1 (MQ=21)
gTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATa < 1:1172708/101‑1 (MQ=21)
tCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATaa < 1:994567/101‑1 (MQ=21)
tCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATaa < 2:336412/101‑1 (MQ=21)
tgctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAg < 1:466652/101‑1 (MQ=21)
gctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGa < 1:1286261/101‑1 (MQ=21)
gctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGa < 2:2318904/101‑1 (MQ=21)
ctgcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 1:1542328/101‑1 (MQ=21)
ctgcGACCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 2:2188758/101‑1 (MQ=21)
ctgcCTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGAt < 2:768367/101‑1 (MQ=21)
gcGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCa < 2:1312510/101‑1 (MQ=21)
cGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCtt < 1:1229641/101‑1 (MQ=21)
cGGCGAAAGGCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCtt < 1:3375290/101‑1 (MQ=21)
ggCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCttt < 1:1035683/101‑1 (MQ=21)
gCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTc < 2:448966/101‑1 (MQ=21)
cGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCa < 2:4098895/101‑1 (MQ=21)
cGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCa < 1:2829600/101‑1 (MQ=21)
aaaGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGTGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGa < 2:2301888/101‑1 (MQ=25)
aGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAg < 1:2964383/101‑1 (MQ=21)
gTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAgg < 1:2126676/101‑1 (MQ=21)
tCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAggg < 1:2285207/101‑1 (MQ=21)
tCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAggg < 2:4070571/101‑1 (MQ=21)
cGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgc < 1:2027165/101‑1 (MQ=21)
gCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcgc < 2:3328001/101‑1 (MQ=21)
cGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGgcgcg < 2:3231677/101‑1 (MQ=21)
gAGTTCGATGCGGAAAGCCTGAGGCTGGCCGGGAGCTTCGCGCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAg < 2:107296/101‑1 (MQ=19)
gAGTTCGATGCCGAAAGCCTGAGGCGGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAg < 2:1019829/101‑1 (MQ=21)
aGTTCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAgg < 1:3722447/101‑1 (MQ=21)
ggtCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAggg < 1:1019045/99‑1 (MQ=21)
ttCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGCCCCCCAGGATATTTTCAGAAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGc < 2:2605639/101‑1 (MQ=21)
ttCGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGc < 1:2199852/101‑1 (MQ=21)
cGATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGt < 1:919667/101‑1 (MQ=21)
gATGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTa < 2:3025946/101‑1 (MQ=21)
aTGCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTaa < 2:1755229/101‑1 (MQ=21)
gCCGAAAGCCTGAGGCAGGCCGGGGGCTTCGCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAg < 2:2192825/101‑1 (MQ=21)
|||||||
CATCATTCAGGTGATGGACGACGGCTTCCTGCTGCACGACCGTCTGCTGCGTCCGGCGAAAGTCGGCGTGAGTTCGATGCCGAAAGCCTGAGGCAGGCCGG.......GCCCCCGGACCCCCAGGATATTTTCAGCAAGATAAAGATCAGTCTTTCAGAAGGGCGCGCAGGGCGTAAAG > NC_014034/3701333‑3701504
Base quality scores:
ATCG
< 3 ≤
ATCG
< 20 ≤
ATCG
< 29 ≤
ATCG
< 34 ≤
ATCG
< 41 ≤
ATCG
|