BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_014034	963,936	+CCCC	100%	intergenic (+23/‑78)	RCAP_rcc00874 → / → atzB	inositol monophosphatase/hydroxydechloroatrazine ethylaminohydrolase

Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_014034	963,936	1	.→C	100.0%	53.2	14	intergenic (+23/‑78)	RCAP_rcc00874/atzB	inositol monophosphatase/hydroxydechloroatrazine ethylaminohydrolase
Reads supporting (aligned to +/- strand): new base (0/14): ref base (0/0): total (0/14)
*	NC_014034	963,936	2	.→C	100.0%	52.4	14	intergenic (+23/‑78)	RCAP_rcc00874/atzB	inositol monophosphatase/hydroxydechloroatrazine ethylaminohydrolase
Reads supporting (aligned to +/- strand): new base (0/14): ref base (0/0): total (0/14)
*	NC_014034	963,936	3	.→C	100.0%	52.3	14	intergenic (+23/‑78)	RCAP_rcc00874/atzB	inositol monophosphatase/hydroxydechloroatrazine ethylaminohydrolase
Reads supporting (aligned to +/- strand): new base (0/14): ref base (0/0): total (0/14)
*	NC_014034	963,936	4	.→C	100.0%	52.7	14	intergenic (+23/‑78)	RCAP_rcc00874/atzB	inositol monophosphatase/hydroxydechloroatrazine ethylaminohydrolase
Reads supporting (aligned to +/- strand): new base (0/14): ref base (0/0): total (0/14)


GCATATCGTGGCGGGCGGGTGCTGGCGGCGGCCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCG....CCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGCGCGGGAGGCATCTGATG  >  NC_014034/963836‑964016


                                                                                                     ||||


gCATATCGTGGCGGGCGGGTGCTGGCGGCGGCCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTgccg                                                                                      <  2:3912655/101‑1 (MQ=255)


gCATATCGTGGCGGGCGGGTGCTGGCGGCGGCCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTgccg                                                                                      <  2:3204535/101‑1 (MQ=255)


     tCGTGGCGGGCGGGTGCTGGCGGCGGCCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTgccg....ccccc                                                                             <  2:879402/101‑4 (MQ=255)


                       ggcggcggcCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGGGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAg                                                               <  1:3590448/101‑1 (MQ=255)


                       ggcggcggcCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAg                                                               <  2:1394751/101‑1 (MQ=255)


                              gcCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCt                                                        <  2:2939518/101‑1 (MQ=255)


                              gcCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCt                                                        <  2:2727975/101‑1 (MQ=255)


                                         ggTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTc                                             <  1:459915/101‑1 (MQ=255)


                                                   gcggcgATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTcccc                                   <  2:649258/101‑1 (MQ=255)


                                                           ggCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGAt                           <  2:1909287/101‑1 (MQ=255)


                                                            gCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCACTCGGGCCCCTTCGGACTTCCCCGAGGGGAtt                          <  2:2354881/101‑1 (MQ=255)


                                                                    gAACGGCTGGAGGGGAAGCTCGGGCGGCTGCCGCCCCCCTAACCCCCCGCCCGAAGGGCCCCTCGGGCCTCTTCGGACTTCCCCGAGGGGAttgcgttgcg                  <  2:1996256/101‑1 (MQ=255)


                                                                     aaCGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACTCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTgcgc                 <  2:2127487/101‑1 (MQ=255)


                                                                      aCGGCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGcgcg                <  1:1661535/101‑1 (MQ=255)


                                                                        ggCTGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGCGCggg              <  2:3965234/101‑1 (MQ=255)


                                                                           tGAGGGGGAAGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGCGCGGGAgg           <  1:443454/101‑1 (MQ=255)


                                                                                   aaGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGCGCGGGAGGCATCTGAt   <  2:2395344/101‑1 (MQ=255)


                                                                                    aGGTCGGGGGGCTGCCGCCCCCCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGCGCGGGAGGCATCTGATg  <  1:3167615/101‑1 (MQ=255)


                                                                                                     ||||


GCATATCGTGGCGGGCGGGTGCTGGCGGCGGCCAATGCCGAGGTGCATGCGGCGGCGATGGCGGTCCTGAACGGCTGAGGGGGAAGGTCGGGGGGCTGCCG....CCGAACCCCCCGCCCGAAGGGGCCCTCGGGCCCCTTCGGACTTCCCCGAGGGGATTGCGTTGCGCGGGAGGCATCTGATG  >  NC_014034/963836‑964016

Base quality scores:


ATCG

< 3 ≤


ATCG

< 17 ≤


ATCG

< 25 ≤


ATCG

< 33 ≤


ATCG

< 40 ≤


ATCG