New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1374215 (1.100)2 (0.010) 2/184 31.5 0.01 coding (1024/1374 nt) dnaA chromosomal replication initiator protein DnaA
?NC_014034 2807796 = 160 (0.760)coding (410/1059 nt) pyrD2 dihydroorotate oxidase
Rejected: Position hash score below cutoff.

TCGTGGCCTCGGGCGTGCTGGAATTCCTGGCGCATCGGATCACCACGAACGTGCGCGTGCTGGAAGGCGCGCTGACGCGGCTTTTCGCCTTTGCCTCGCTGGTCGGGC....................................................................................................  >  NC_014034/1267‑1374
....................................................................................................GGTCGGGCTGAACCTTGGCGCGAACAAGGACAGCGCCGACCGGGCCGCCGATTTCGCCACGGTGCTGAAGCGCGCCGGCGCGCATATCGACTTTGCCACGGTGAACGT  >  NC_014034/2807796‑2807895
                                                                                                                                                                                                                
                                 ATCGGATCACCACGAACGTGCGCGTGCTGGAAGGCGCGCTGACGCGGCTTTTCGCCTTTGCCTCGCTGGTCGGGCTGAACCTTGGCGCGAACAAGGACAGC                                                                            >  1:3531933/1‑101 (MQ=255)
                                      ATCACCACGAACGTGCGCGTGCTGGAAGGCGCGCTGACGCGGCTTTTCGCCTTTGCCTCGCTGGTCGGGCTGAACCTTGGCGCGAACAAGGACAGCGCCGA                                                                       <  2:3531680/101‑1 (MQ=255)
                                                                                                                                                                                                                
TCGTGGCCTCGGGCGTGCTGGAATTCCTGGCGCATCGGATCACCACGAACGTGCGCGTGCTGGAAGGCGCGCTGACGCGGCTTTTCGCCTTTGCCTCGCTGGTCGGGC....................................................................................................  >  NC_014034/1267‑1374
....................................................................................................GGTCGGGCTGAACCTTGGCGCGAACAAGGACAGCGCCGACCGGGCCGCCGATTTCGCCACGGTGCTGAAGCGCGCCGGCGCGCATATCGACTTTGCCACGGTGAACGT  >  NC_014034/2807796‑2807895

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG