New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396098 =	140 (1.000)	32 (0.230)	7/132	21.1	0.17	intergenic (+910/‑21)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1396802	183 (0.860)					coding (684/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

TGACGAAAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA..............................................................................  <  NC_014034/1396139‑1396098 ............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCG  <  NC_014034/1396802‑1396759                                           ||||||||||||||||||||||||||||||||||                                             accggcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                     >  1:2389571/9‑101 (MQ=9) accggcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                     <  2:3029435/93‑1 (MQ=9) accggcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGG                     <  2:3922592/93‑1 (MQ=9)  ccggcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                    >  1:1143593/8‑101 (MQ=9)  ccggcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGG                    <  1:1183267/94‑1 (MQ=9)    ggcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAG                  >  1:361102/6‑101 (MQ=2)     gcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  2:164189/97‑1 (MQ=0)     gcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 >  2:4108099/5‑101 (MQ=0)     gcacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGC                 <  1:4226149/97‑1 (MQ=0)      cacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                <  2:566769/98‑1 (MQ=1)      cacAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCG                >  1:4122007/4‑101 (MQ=1)        cAGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC              >  1:2323237/2‑101 (MQ=1)         AGTTTCGATCCCCGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT             <  2:1708598/101‑1 (MQ=0)         AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACc             >  2:1034304/1‑100 (MQ=1)         AGTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACT             >  1:3098174/1‑101 (MQ=1)          GTTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTC            <  1:1112130/101‑1 (MQ=1)           TTTCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCc           >  2:12812/1‑100 (MQ=1)             TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         >  1:776596/1‑98 (MQ=0)             TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         >  2:1998846/1‑98 (MQ=0)             TCGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgt         <  2:1872176/101‑4 (MQ=0)             TCGATCCACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgc         >  2:2557425/1‑98 (MQ=1)              CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  2:777493/1‑97 (MQ=0)              CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        <  2:1770830/101‑5 (MQ=0)              CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  1:63788/1‑97 (MQ=0)              CGATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtc        >  1:1596964/1‑97 (MQ=0)               GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcc       >  2:1531513/1‑96 (MQ=0)               GATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcc       <  1:710791/101‑6 (MQ=0)                ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACcccgtccc      >  1:3070347/1‑93 (MQ=0)                ATCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtccc      >  2:3074343/1‑95 (MQ=0)                 TCCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtccca     >  1:3481420/1‑94 (MQ=0)                  CCACGCCCCCGCGGGGTGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcccaa    <  1:964861/101‑9 (MQ=0)                    ACGCCCCCGCGGGGGGAGCGACATAGGTTGGCCCGGCGCCCGCCCCCATTGAAAGCTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCcgtcccaaac  >  1:1732935/1‑91 (MQ=0)                                           ||||||||||||||||||||||||||||||||||                                             TGACGAAAAGTTTCGATCCACGCCCCCGCGGGGGGAGCGACA..............................................................................  <  NC_014034/1396139‑1396098 ............................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACTCAAGGGCATCG  <  NC_014034/1396802‑1396759 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG