New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1396705 =	137 (0.990)	44 (0.320)	9/130	19.3	0.24	coding (587/1578 nt)	RCAP_rcc01307	hypothetical protein
	?	NC_014034	= 1396737	143 (0.680)					coding (619/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

ATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG................................................................................  <  NC_014034/1396749‑1396705 ................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGATCGC  <  NC_014034/1396737‑1396693                                              |||||||||||||||||||||||||||||||||||                                              ggtgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCG                          >  2:3801100/9‑101 (MQ=0) ggtgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCG                          >  2:1064008/9‑101 (MQ=0)   tgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                        >  1:3223744/7‑101 (MQ=0)   tgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                        >  1:3862991/7‑101 (MQ=0)   tgtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGG                        <  1:509635/95‑1 (MQ=0)    gtcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGG                       <  1:3279536/96‑1 (MQ=0)     tcagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGG                      <  2:1438207/97‑1 (MQ=0)      cagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGG                     <  2:2927319/98‑1 (MQ=1)      cagCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGG                     >  1:2122348/4‑101 (MQ=1)        gCAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAG                   <  2:2861610/100‑1 (MQ=1)         CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGCGC                  >  1:648318/1‑101 (MQ=0)         CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                  >  2:639350/1‑101 (MQ=1)         CAGCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGC                  <  1:2438902/101‑1 (MQ=1)          agcGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCG                 >  2:896233/4‑101 (MQ=1)            cGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGAC               <  2:3377662/100‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG              <  2:3618542/101‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG              <  2:836257/101‑1 (MQ=1)             GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG              >  2:292905/1‑101 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA             <  2:4067721/101‑1 (MQ=1)              TTTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGA             <  1:1696140/101‑1 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT            <  2:3253669/101‑1 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT            <  1:3139733/101‑1 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT            <  2:1583620/101‑1 (MQ=1)               TTCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGAT            <  2:2043874/101‑1 (MQ=1)                gCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATa           <  1:512400/100‑2 (MQ=1)                TCGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATa           <  2:2813122/101‑2 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCCGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCAGCGGGGGGAGCGACGATag          <  1:3667340/101‑3 (MQ=0)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATag          >  2:3909026/1‑99 (MQ=1)                 CGATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATaa          >  2:512343/1‑99 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagc         >  2:3689584/1‑98 (MQ=1)                  GATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagc         >  1:4103861/1‑98 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcc        >  2:2943274/1‑97 (MQ=1)                   ATCCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcc        >  1:1265166/1‑97 (MQ=1)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCATATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccg      >  2:1775742/1‑95 (MQ=0)                     CCACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccg      >  1:1363053/1‑95 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgcc    >  2:3829957/1‑93 (MQ=0)                       ACGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgcc    <  1:1397651/101‑9 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccg   <  2:2020213/101‑10 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccg   <  1:886214/101‑10 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccg   <  1:794005/101‑10 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccg   >  2:4185976/1‑92 (MQ=0)                        CGCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccg   >  2:539692/1‑92 (MQ=0)                         GCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccgt  >  2:1944034/1‑91 (MQ=0)                         GCCCCCGCGGGGGGAGCGACGCCGCAGATCCAGCGCGTCAAGCAGGTCTTCGACCCGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATagcccgccgt  >  1:3128983/1‑91 (MQ=0)                                              |||||||||||||||||||||||||||||||||||                                              ATGAGGGACAGGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG................................................................................  <  NC_014034/1396749‑1396705 ................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGATGACGGATCGC  <  NC_014034/1396737‑1396693 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG