New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1671305200 (1.050)2 (0.010) 2/180 31.1 0.01 coding (543/573 nt) dctQ2 TRAP C4‑dicarboxylate transport system permease subunit DctQ
?NC_014034 = 2928113 210 (0.990)intergenic (+121/‑316) RCAP_rcc02739/RCAP_rcc02740 hypothetical protein/ParB domain‑containing protein nuclease
Rejected: Position hash score below cutoff.

GCTTTGCGCTGCTTTTCGCGCAGGGCCTGTCGGAGATCATCAAGAAGATCGGGGTGATGCGGGGGCTGATCGCGGATCCGCACACCTTCACCGGCCATCACGGCGCGGCC....................................................................................................  >  NC_014034/1671196‑1671305
....................................................................................................CGGCGCGGCCTCTGCCTGCGCGCTCCACTCCGAGTATATCGCTATGGATAGCTGCTTTTGGGCGATCCGTCTCACCATGCGATGTCTCGCAAGAAATCGTCTCACTACCC  <  NC_014034/2928113‑2928014
                                                                                                                                                                                                                  
                                GAGATCATCAAGAAGATCGGGGTGATGCGGGGGCTGATCGCGGATCCGCACACCTTCACCGGCCATCACGGCGCGGCCTCTGCCTGCGCGCTCCACTCCGA                                                                               >  2:1786349/1‑101 (MQ=255)
                                      ATCAAGAAGATCGGGGTGATGCGGGGGCTGATCGCGGATCCGCACACCTTCACCGGCCATCACGGCGCGGCCTCTGCCTGCGCGCTCCACTCCGAGTATAT                                                                         <  1:1786468/101‑1 (MQ=255)
                                                                                                                                                                                                                  
GCTTTGCGCTGCTTTTCGCGCAGGGCCTGTCGGAGATCATCAAGAAGATCGGGGTGATGCGGGGGCTGATCGCGGATCCGCACACCTTCACCGGCCATCACGGCGCGGCC....................................................................................................  >  NC_014034/1671196‑1671305
....................................................................................................CGGCGCGGCCTCTGCCTGCGCGCTCCACTCCGAGTATATCGCTATGGATAGCTGCTTTTGGGCGATCCGTCTCACCATGCGATGTCTCGCAAGAAATCGTCTCACTACCC  <  NC_014034/2928113‑2928014

Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG