New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732870 =	21 (0.130)	28 (0.170)	13/154	19.3	0.49	intergenic (‑294/‑109)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	= 2474937	37 (0.170)					intergenic (‑100/+26)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

CTGAACTGGGTCATCGGGCGCTCCTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCG.................................................................................................  <  NC_014034/1732992‑1732870 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCCCGCACCCCCCGCCTTGCGTATTTGGCCAAGGAAAAGCCGGGCCGTTCGGGTGGGGGGGGCCGCGGTTTCCTGTC  <  NC_014034/2474937‑2474841                                                                                                                                                                                                                                                     CTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGA                                                                                                  >  1:3905345/1‑101 (MQ=1)                          tgGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACC                                                                                                <  2:1481210/99‑1 (MQ=1)                          TTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACC                                                                                                >  2:1583532/1‑101 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                                                                                               >  1:1470032/1‑101 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                                                                                               <  1:162642/101‑1 (MQ=1)                           TGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCC                                                                                               >  1:751935/1‑101 (MQ=1)                            GGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCG                                                                                              <  1:1125441/101‑1 (MQ=1)                            GGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCG                                                                                              <  2:3572385/101‑1 (MQ=1)                              cgcctGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCG                                                                                            <  1:3411169/96‑1 (MQ=1)                              CGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCG                                                                                            >  1:3181313/1‑101 (MQ=1)                                 GCGTTTAGCAGCGCCGGGCCGGAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGG                                                                                         >  1:2409251/1‑101 (MQ=1)                                   GTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                       >  2:3856734/1‑101 (MQ=1)                                    TTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCcgccgcggg                                                                                      >  1:752122/1‑92 (MQ=0)                                     TTAGCAGCGCGGGGCCGAAAGGGAAAGCGACGCGGGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                     <  1:142163/101‑1 (MQ=0)                                     TTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                     >  2:1884527/1‑101 (MQ=1)                                     TTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                     >  1:57306/1‑101 (MQ=1)                                     TTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                     <  1:245476/101‑1 (MQ=1)                                     TTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTCCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                     <  2:3135306/101‑1 (MQ=1)                                      TAGCAGGGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTGCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTt                                                                                    <  1:407361/101‑2 (MQ=2)                                      TAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGggt                                                                                    >  1:1658138/1‑98 (MQ=1)                                      TAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTt                                                                                    <  1:3209876/101‑2 (MQ=11)                                        GCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTtca                                                                                  <  2:1137093/101‑4 (MQ=14)                                         CAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGgttccc                                                                                 >  1:2428288/1‑95 (MQ=11)                                            CGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGGTTCACCCC                                                                              >  2:4186570/1‑101 (MQ=12)                                             GCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCC                                                                             >  2:3477174/1‑101 (MQ=17)                                              cgGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC                                                                            <  1:3548913/99‑1 (MQ=12)                                              CCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC                                                                            <  1:3420310/101‑1 (MQ=17)                                              CCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTTCACCCCCC                                                                            <  2:3048376/101‑1 (MQ=17)                                                                                                                                                                                                                              CTGAACTGGGTCATCGGGCGCTCCTTTGGCGCGCGTTTAGCAGCGCCGGGCCGAAAGGGAAAGCGACGCGCGCAGGCAAGGTTTTCACGGGGGGAAGCTTTCGCCTCGGGCAAGCCCGAGGCG.................................................................................................  <  NC_014034/1732992‑1732870 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCCCGCACCCCCCGCCTTGCGTATTTGGCCAAGGAAAAGCCGGGCCGTTCGGGTGGGGGGGGCCGCGGTTTCCTGTC  <  NC_014034/2474937‑2474841 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 32 ≤  ATCG  < 39 ≤  ATCG