New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1873501 =	192 (1.000)	2 (0.010)	2/182	31.3	0.01	coding (278/1200 nt)	RCAP_rcc01735	NnrS family protein
	?	NC_014034	= 3668157	167 (0.790)					coding (319/903 nt)	mepA	penicillin‑insensitive murein endopeptidase MepA
Rejected: Position hash score below cutoff.

GCTATGGCGGCGCGGTGCTGGCGGGGATCTTCCTCGCCTCGGCGCCGAAAGCGCTGCGGGGGATCTATTTTCCGATGCTGGCCGGGCTCTGGCTGGCCGGGCGGCTGGC....................................................................................................  <  NC_014034/1873609‑1873501 ....................................................................................................GCGGCTGGCTCAGATCGCCGATGTAAAGCCCGCGCCAGCCCGGCAGCGTGGCGGCAAAGGCCGAGAGATCCTGCAGATAGGCGACCAGTTCCGGCTGCCCCCAGTTGCG  <  NC_014034/3668157‑3668058                                                                                                                                                                                                                                                                 GAAAGCGCTGCGGGGGATCTATTTTCCGATGCTGGCCGGGCTCTGGCTGGCCGGGCGGCTGGCTCAGATCGCCGATGTAAAGCCCGCGCCAGCCCGGCAGC                                                                >  1:2499658/1‑101 (MQ=255)                                                               ATCTATTTTCCGATGCTGGCCGGGCTCTGGCTGGCCGGGCGGCTGGCTCAGATCGCCGATGTAAAGCCCGCGCCAGCCCGGCAGCGTGGCGGCAAAGGCCG                                                <  2:2499474/101‑1 (MQ=255)                                                                                                                                                                                                                   GCTATGGCGGCGCGGTGCTGGCGGGGATCTTCCTCGCCTCGGCGCCGAAAGCGCTGCGGGGGATCTATTTTCCGATGCTGGCCGGGCTCTGGCTGGCCGGGCGGCTGGC....................................................................................................  <  NC_014034/1873609‑1873501 ....................................................................................................GCGGCTGGCTCAGATCGCCGATGTAAAGCCCGCGCCAGCCCGGCAGCGTGGCGGCAAAGGCCGAGAGATCCTGCAGATAGGCGACCAGTTCCGGCTGCCCCCAGTTGCG  <  NC_014034/3668157‑3668058 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG