New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1976891	165 (0.780)	43 (0.200)	11/200	25.0	0.29	intergenic (‑70/+10)	fba/gap1	fructose‑bisphosphate aldolase/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_014034	= 2330175	42 (0.200)					intergenic (+150/+162)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CAACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCC...................................................................................................  >  NC_014034/1976792‑1976891 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC  <  NC_014034/2330175‑2330077                                                                                                                                                                                                         CAACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCC                                                                                                    >  1:4069546/1‑101 (MQ=255) CAACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCC                                                                                                    >  2:1290249/1‑101 (MQ=255) CAACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCC                                                                                                    <  1:268725/101‑1 (MQ=255)  AACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG                                                                                                   >  1:1381081/1‑101 (MQ=255)  AACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCG                                                                                                   >  1:2760427/1‑101 (MQ=255)   ACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGg                                                                                                  >  2:176112/1‑100 (MQ=255)    CAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgc                                                                                                 >  1:387965/1‑99 (MQ=255)    CAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgc                                                                                                 <  2:2012818/101‑3 (MQ=255)     AGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgct                                                                                                >  1:1636121/1‑98 (MQ=255)      GTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgctt                                                                                               >  1:821362/1‑97 (MQ=255)      GTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgctt                                                                                               >  2:3000386/1‑97 (MQ=255)      GTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgctt                                                                                               >  2:307634/1‑97 (MQ=255)       TTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgcttt                                                                                              >  2:2938501/1‑96 (MQ=255)        TGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgctttt                                                                                             >  1:3161751/1‑95 (MQ=255)           CGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCCCGgcttttctc                                                                                          >  2:1126523/1‑92 (MQ=255)                                                                    gcAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGC                                 >  1:2508570/3‑101 (MQ=11)                                                                     cAAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCG                                >  1:2927213/2‑101 (MQ=14)                                                                      AAATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGC                               >  2:2662518/1‑101 (MQ=32)                                                                        ATACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGC                             <  2:1130215/101‑1 (MQ=32)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                            >  1:676115/1‑101 (MQ=32)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                            >  1:111910/1‑101 (MQ=32)                                                                         TACGCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCC                            >  1:1937040/1‑101 (MQ=32)                                                                            GCCGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTT                         >  2:2471634/1‑101 (MQ=32)                                                                              CGGGGGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGC                       >  1:3678837/1‑101 (MQ=32)                                                                                  GGTGCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCC                   >  2:804673/1‑101 (MQ=32)                                                                                    tgCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCT                 >  2:531145/3‑101 (MQ=32)                                                                                     ggGGGGGCGGCCCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                <  1:2500242/99‑1 (MQ=0)                                                                                     gCGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTT                >  1:1201300/2‑101 (MQ=32)                                                                                      gGGGGGCGGCGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG               <  2:1376707/100‑1 (MQ=1)                                                                                      CGGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTG               >  2:2913913/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG              >  2:3896242/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG              >  2:3529538/1‑101 (MQ=32)                                                                                       GGGGGCGGAGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGG              >  1:612223/1‑101 (MQ=32)                                                                                          ggcggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG           >  1:2267797/7‑101 (MQ=31)                                                                                          gcgcgccCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGG           <  1:2374538/94‑1 (MQ=0)                                                                                             ggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG        >  1:1738679/4‑101 (MQ=1)                                                                                             ggaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGG        >  1:3210951/4‑101 (MQ=1)                                                                                              gaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC       >  2:2589968/3‑101 (MQ=1)                                                                                              gaGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGC       >  2:3030/3‑101 (MQ=1)                                                                                               aGCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCC      >  1:2023306/2‑101 (MQ=1)                                                                                                cCCCCGGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA     <  2:938380/100‑1 (MQ=1)                                                                                                cCCCCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCA     <  2:783732/100‑1 (MQ=1)                                                                                                   CCCGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC  >  1:3054466/1‑101 (MQ=1)                                                                                                                                                                                                         CAACAGTTGCCGAAGGGTGATCAGTGCCATTTTCTCAGTTCCTTGAGTTCGCGGCCTTTTTCTTGGCCGAAATACGCCGGGGGTCCGGGGGCAGCGCCCC...................................................................................................  >  NC_014034/1976792‑1976891 ....................................................................................................CGCCCGGGTCGCCGCGCCTGCGCGGCGAAATTCCTCTCCGCCATCGGCCGATCCGTGCGGCGCTCTGCGCGCCGTTGCCGCCCTTGGCGGAGGCCAAGC  <  NC_014034/2330175‑2330077 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG