New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2500292 =235 (1.180)2 (0.010) 2/188 31.8 0.01 coding (1021/1809 nt) RCAP_rcc02326 phage integrase
?NC_014034 = 2739114 192 (0.910)coding (290/1416 nt) RCAP_rcc02544 ABC transporter substrate‑binding protein
Rejected: Position hash score below cutoff.

ACGTGAAGGTGAAGGTCTTTGAGTTCTTCTCTTTCTTAAGGGCCATGCGCGACACGGGGTTCTGTGCCAGATAGCCATTCTCGACAAGCCAATTGCAGAAGGCACC....................................................................................................  <  NC_014034/2500397‑2500292
....................................................................................................GGCACCGGCATCAGATAGGGCGCGACATCGGGCAGCCAGTCGGCGGGCAGGATCAGCACATCGGCGGGGGGGCTGCCGGTGACGAAGCCCATCATCACCGCCCCGT  <  NC_014034/2739114‑2739015
                                                                                                                                                                                                              
                             TCTTTCTTAAGGGCCATGCGCGACACGGGGTTCTGTGCCAGATAGCCATTCTCGACAAGCCAATTGCAGAAGGCACCGGCATCAGATAGGGCGCGACATCG                                                                              >  2:1539356/1‑101 (MQ=255)
                                       GGGCCATGCGCGACACGGGGTTCTGTGCCAAATAGCCATTCTCGACAAGCCAATTGCAGAAGGCACCGGCATCAGATAGGGCGCGACATCGGGCAGCCAGT                                                                    <  1:1539460/101‑1 (MQ=255)
                                                                                                                                                                                                              
ACGTGAAGGTGAAGGTCTTTGAGTTCTTCTCTTTCTTAAGGGCCATGCGCGACACGGGGTTCTGTGCCAGATAGCCATTCTCGACAAGCCAATTGCAGAAGGCACC....................................................................................................  <  NC_014034/2500397‑2500292
....................................................................................................GGCACCGGCATCAGATAGGGCGCGACATCGGGCAGCCAGTCGGCGGGCAGGATCAGCACATCGGCGGGGGGGCTGCCGGTGACGAAGCCCATCATCACCGCCCCGT  <  NC_014034/2739114‑2739015

Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG