New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	3287801 =	176 (0.920)	2 (0.010)	2/180	31.1	0.01	coding (77/585 nt)	rimJ	ribosomal‑protein‑alanine N‑acetyltransferase
	?	NC_014034	= 3428584	223 (1.050)					coding (301/456 nt)	RCAP_rcc03228	universal stress family protein
Rejected: Position hash score below cutoff.

CTGGCGGGGCTGCGGCGGAGGCTTGCGGCCTGATGTTCCTGCGGCGTCGGAAACCCCAGGTCGAGACCGAGCGGATGACGCTGCGTCTGCCCCTGCATTCCGATTTCCG....................................................................................................  <  NC_014034/3287909‑3287801 ...................................................................................................CCGATTTCCGGATCTTCGCGCACCAGCCCCATGATTTCGGTCACCGGATCGCCCTCGCGGATCACCAGATCGGGGTTCACCCCCTGCTTGTCGCGCATCCATTTCGCGAA  <  NC_014034/3428584‑3428485                                                                                                                                                                                                                                                                               TCGAGACCGAGCGGATGACGCTGCGTCTGCCCCTGCATTCCGATTTCCGGATCTTCGCGCACCAGCCCCATGATTTCGGTCACCGGATCGCCCTCGCGGAT                                                  <  1:1606887/101‑1 (MQ=255)                                                              CGAGACCGAGCGGATGACGCTGCGTCTGCCCCTGCATTCCGATTTCCGGATCTTCGCGCACCAGCCCCATGATTTCGGTCACCGGATCGCCCTCGCGGATa                                                 >  2:1606778/1‑100 (MQ=255)                                                                                                                                                                                                                   CTGGCGGGGCTGCGGCGGAGGCTTGCGGCCTGATGTTCCTGCGGCGTCGGAAACCCCAGGTCGAGACCGAGCGGATGACGCTGCGTCTGCCCCTGCATTCCGATTTCCG....................................................................................................  <  NC_014034/3287909‑3287801 ...................................................................................................CCGATTTCCGGATCTTCGCGCACCAGCCCCATGATTTCGGTCACCGGATCGCCCTCGCGGATCACCAGATCGGGGTTCACCCCCTGCTTGTCGCGCATCCATTTCGCGAA  <  NC_014034/3428584‑3428485 Base quality scores:  ATCG  < 3 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG